KEGG   Alteromonas mediterranea MED64: I533_00265Help
Entry
I533_00265        CDS       T02958                                 

Definition
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
  KO
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
amag  Alteromonas mediterranea MED64
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:amag00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    I533_00265
Enzymes [BR:amag01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     I533_00265
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     I533_00265
DNA repair and recombination proteins [BR:amag03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     I533_00265
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
Position
61508..62317
Genome map
AA seq 269 aa AA seqDB search
MPELPEVEVSRLGVSPHLIGNTITRVVVRERRMRWPIPQEVAKVEGQKVTAVKRRAKYLL
IETAQGTLILHLGMSGKLRVIDASTPVIKHDHVDIVLSTGKCLRFNDPRRFGAVLYQAPD
THIPMLDNLGPEPLTDDFDDTRLFTLSRNRKGPVKNFIMDNAIVVGVGNIYANEALFLAG
IDPRRAAGNISAARYKSLTATIKQVLAKAIEQGGTTLKDFAQTDGKPGYFAQHLNVYGRK
GEPCEACGKAIESKVIGQRNTFFCTRCQR
NT seq 810 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaattacccgaagttgaagtaagccgtttgggcgtctcaccacatcttattggc
aacacgattacccgtgttgtggttcgcgagcgaagaatgcgttggcctattccacaagag
gtggccaaggttgaggggcaaaaggtcacggccgtaaagcgccgcgctaaatatctattg
attgagacagcgcagggtacgctaattttacacttgggcatgtcgggtaaactacgggtt
atcgacgcttctaccccagtgattaagcacgaccatgtggacattgtgcttagcacgggt
aaatgtctgcgctttaacgaccctagacgcttcggtgccgtgctgtatcaagcgccagat
acacacattcccatgcttgataatcttgggcctgagccccttacagacgattttgacgat
acgcgcttatttaccctgtcacgcaaccgcaaaggcccagtgaaaaacttcattatggat
aatgctattgtggtgggggttggaaatatctatgcaaacgaagcgctatttttagcgggt
atcgatccaaggcgtgccgccggtaatatcagtgcagcccgctacaagtcgttaaccgct
acaataaagcaagtgttggcaaaagccattgaacagggcggcactacgttaaaagatttt
gcgcaaacagatggcaagcctggctatttcgcccaacaccttaatgtctatggccgaaaa
ggagagccatgcgaggcgtgtggtaaggcgatagaaagcaaagtaatcgggcagcgcaat
accttcttttgtactcgctgccaacgttaa

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