KEGG   Alteromonas mediterranea MED64: I533_09360
Entry
I533_09360        CDS       T02958                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
amag  Alteromonas mediterranea MED64
Pathway
amag03030  DNA replication
amag03410  Base excision repair
amag03420  Nucleotide excision repair
amag03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    I533_09360
   03410 Base excision repair
    I533_09360
   03420 Nucleotide excision repair
    I533_09360
   03430 Mismatch repair
    I533_09360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amag03032]
    I533_09360
   03400 DNA repair and recombination proteins [BR:amag03400]
    I533_09360
Enzymes [BR:amag01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     I533_09360
DNA replication proteins [BR:amag03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     I533_09360
DNA repair and recombination proteins [BR:amag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     I533_09360
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     I533_09360
   MMR (mismatch excision repair)
    DNA ligase
     I533_09360
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      I533_09360
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH RNA_ligase 5_3_exonuc DZR_2
Other DBs
NCBI-ProteinID: AGP81842
Position
2087664..2089700
AA seq 678 aa
MSDTLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSLQSPN
SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDTSSLHFSCEPKL
DGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLRLRGDAHPDRVEVRGEVFM
PREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPDNFT
LPTTHSERLSQLAKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDNLPYDIDGVVFKVNRI
DLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEITRLGVKVGDTVVIRRAGDVIPQVVSVVDTKRTGSENDIAFPSQCPVCGSQ
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADF
FTLSLGDVVGLERMAEKSASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFET
LDAIRDASIEALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNL
PLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELD
VEVWDEAKLIAFLAENEK
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgtctgacactttagaacaagctcgaaaaaaagttgccgaactgcgcaacaccttaaac
gaatataactaccagtattatgtattggacgatccctcaatacccgacgcggtatacgat
agggatatgcagtcacttattgcgcttgaaaaacagtatccttctttacaaagccctaat
tccccaagtcaaaaagtggggggggaggcattatcggcatttgagcaagtcacccacgac
gtgcctatgctttcgcttgataatgctttcgatgaggaatctcttcttgcttttgaaaag
cgtctcaaggatagattaaaagacacatcaagtttgcatttcagttgcgagcctaagtta
gatggccttgccgtaagtatcctttatgagaatggtgaacttgttcgtgcggccacacga
ggtgacggtcaagtcggtgagaatattacggcgaatgtacgcactatttctaacgtgccg
ttaaggttgcgcggagacgctcaccccgatcgcgtagaagttcgcggtgaagtattcatg
cctcgcgagggctttgctaagttaaacgaacatcagaaaaacgccggtggtaaggtgttt
gccaatccacggaatgccgcagcgggaagtttacgtcagcttgattcaaaaataaccgct
aaacgcccgttgatgttttatgcatactcgctgggcgtagtacaacctgataactttacg
ctacctaccacccatagcgaacgcctctcacaattagctaaatgggggctgcccttgtgc
cccgatattgatacagctgaaggtgggcgaggctgtctcgattactatcatcatatatta
gaaaagcgtgacaacttaccttacgacatagacggcgttgtctttaaagttaaccgtatt
gatttacaggctgcgctagggtttgtagcacgtgcgccaaggtgggcaattgcacaaaag
tttcctgcccaagaagaagtgactaaactgcttgatgtagagtttcaggttggccgtacc
ggtgcaattacccctgtcgcaaggcttgagcccgtttttgtaggcggtgtaactgtgtca
aatgcgaccttgcacaaccaagatgagattactcgtttaggcgttaaagtgggtgacact
gtggttatccgtcgtgcaggtgatgttattccgcaggtggtgtctgtggttgatacaaaa
cgtacaggcagcgaaaacgacatagcttttcccagtcagtgccctgtgtgcggctcacaa
gtagaaaagcttgaagatgaggcagttgctcgttgtacgggtgggttaatctgtgcagcg
cagcgcaaacaagcgcttaaacattttgcttctcgaaaggcatttgatattgacggttta
ggggacaaattggtcgatcagctagttgatgccgatttagttcatagccctgctgacttc
tttactctatcacttggtgatgtggttggtttagagcgcatggctgaaaaatcagcgagt
aagttgttatcctctctagaggcatctaaacaaactaccttagcgaagtttctatacgca
cttggtattcgagaagtaggggaagcgacagcagctaatttagcggcgcactttgaaacc
ctcgatgcaattcgcgacgcgtcgatagaggcgctggttgaagtacaggatgtgggcgag
atagtagcaacacatatatttaacttctttaatgagtcacacaatactgatgtgattgat
gcgttgttaaaagaaggcattaactggcctgcgattgaaaaacctgacgcggataactta
ccgcttgagggtaaaacctgtgtgatcaccggaacgcttagcgaaatgggccgctcggat
gctaaagcgcgcttacaactcttaggggctaaagtggcgggttcggtaagtaaaaatacc
gattttctggttgctggagaaaaggcaggctctaaattgacgaaggcccaagagttagac
gttgaggtgtgggatgaagccaaacttattgcttttctcgcagaaaatgagaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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