KEGG   Alteromonas mediterranea U4: I607_03615
Entry
I607_03615        CDS       T02720                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
amal  Alteromonas mediterranea U4
Pathway
amal03410  Base excision repair
amal03430  Mismatch repair
amal03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:amal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    I607_03615
   03430 Mismatch repair
    I607_03615
   03440 Homologous recombination
    I607_03615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amal03400]
    I607_03615
DNA repair and recombination proteins [BR:amal03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     I607_03615
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     I607_03615
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      I607_03615
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 Peripla_BP_6
Other DBs
NCBI-ProteinID: AGP84533
Position
814510..816231
AA seq 573 aa
MILPIVRREISGASLSSDLHPVIDRIYRGRNIANIDDLENGLRGLTHFNALKGMPEAALI
LATAIEQNKRIIIVGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVD
EAAKQGADIIVTVDNGISCIDGVTHAKGLGIQVVVTDHHLPGEVLPPADAIVNPNQPGCE
FPSKNLAGVGVAFYIMLALKAKLQQQGYFEKAGIAPPNLASLLDIVAVGTVADVVVLDKN
NRILVHQGLQRIRAGQCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQG
IACLLEDDTIQARMIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYRE
DFHQGVIGIVAGRLKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVI
EKFGGHAMAAGLSLPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAH
LLRQAGPFGQGFESPLFDGEFSLLDQRLVGQKHLKMVLKGDGANEVDAIAFNVDLKAWPN
AMVKRVHIAYRLDINVFRGQETVQLIVEQIEAL
NT seq 1722 nt   +upstreamnt  +downstreamnt
atgattttgcctattgttcgccgcgagataagcggtgcatccttaagttccgacttacac
cccgttattgatagaatttaccgaggtcgtaatattgcgaatatcgatgatttggaaaac
gggcttagagggcttactcactttaacgcgctaaaaggaatgcctgaggccgcactaatt
cttgccacagcgatagaacaaaataaacgcattatcattgttggcgattttgatgccgac
ggtgcaaccagtacgtcggtttgtattttggcgctacgggcaatgggctttgataacgta
gattttcttgtgcctaaccgattcgactttgggtacgggctcagcgttcctattgttgat
gaagctgccaagcagggcgcagatattattgttaccgtggataacggcatatcgtgcatt
gacggtgttacccatgcaaaagggttaggaatacaagttgtcgttaccgatcaccacttg
ccaggcgaagtgcttccgccagctgatgcgatagtgaatcctaaccaacctgggtgcgag
ttcccttctaaaaatttggcaggggtgggcgttgctttttacatcatgcttgcgttaaaa
gccaagctacagcagcaagggtattttgaaaaagctggcatagctccacctaacttggca
tcactgcttgatatcgttgctgtaggtacggtggccgatgttgtcgtgttggataaaaat
aaccgaatattagtacatcaaggccttcaacgtattcgtgcagggcagtgtaggcctggt
attaaagcgctggtggaagtggcaaatagggattgtgcccacttaacgtcaacagattta
ggttttgtggtaggcccacgacttaatgccgctggacgcttagatgatatgtctcaaggc
attgcgtgtttattagaagatgacacgattcaagcgcgtatgattgccgccgaactcgat
gcactcaacaaagagcgacgagaaatagaaacgggaatgaaagcgcaggcagaaatggcc
ctagaacaaatggtacttgatgaaggcgatatgccaagcgcactggtggtctatcgcgaa
gactttcaccaaggtgttattggtattgtcgctgggcgtttaaaagagaaataccttaag
cccgtgattgcctttgcgcaccaagatgaccttattattaaaggttctgctcgctctatt
cccggcgttcatattcgagacgtactcgatgaagttaatacacgataccctggcgttatc
gagaagttcggtggccatgcgatggcggcgggtcttagcctgccggtagctaaactgcgt
gactttgagcgtgcgtttatcgacattgccggtaaacatttagctaaattagatggaaac
catgccctgctttctgatggtgacttatccgccagtgaactgtgcttacccttcgcccat
ttgcttcgccaagcgggcccgttcggacaaggttttgagtcaccgctttttgacggtgaa
ttctcgcttcttgaccagcgcttagttgggcaaaaacaccttaagatggtgttaaaaggc
gacggggctaatgaagtcgatgctatagcgtttaatgtggacttgaaagcgtggcctaat
gccatggttaagcgtgtgcatatagcttatcgccttgatattaacgtattcagaggacaa
gaaacggttcagcttattgttgagcaaatagaagccctgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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