KEGG   Alteromonas mediterranea U8: I634_00995
Entry
I634_00995        CDS       T02722                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
amao  Alteromonas mediterranea U8
Pathway
amao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I634_00995
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amao03019]
    I634_00995
   03400 DNA repair and recombination proteins [BR:amao03400]
    I634_00995
Enzymes [BR:amao01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     I634_00995
Messenger RNA biogenesis [BR:amao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     I634_00995
DNA repair and recombination proteins [BR:amao03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      I634_00995
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII CRS1_YhbY
Other DBs
NCBI-ProteinID: AGP91949
Position
complement(214924..216765)
AA seq 613 aa
MTTAIAPSESSSNTQSAKTPERILKDVFGYDAFRDGQGEVIHRVCEGKDALVLLPTGGGK
SLCYQIPALVRNGTAIVVSPLISLMQDQVEQLKALGVKAAYLNSTLEADEQAGINDALQA
GKLDLLYVSPERLMQYYFQQSLANADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFP
SIPVIGLTATADTATQADILTQLNLHAPLVYKGSFDRPNIRYRVMSKYKAFDQVVAYVKQ
QEGSGIIYCNSRAKVDDLHAKLFKQGFRCAAYHAGMDSDERELVQRQFLNDKIDIVVATV
AFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQ
GEIAERNQIELQKFAAMEAFSEAQPCRRQVLLNYFSQFSDSACGNCDICLDPPKMIDGLV
IAQKVLSCVLRLSQQASSQYVIDVLRGKQLRRLQEAGHHQLSTYGIGKDKSDSYWHNIIN
QLVHKGLIRVDITAHAALRLTEAARPVLKGEVDVQLAVPRLEFKPDKKKAKQAPANYDRT
LFTRLKHLRKVLAEENEVPPYVVFSDATLVDMACKLPTTRNTMLDVSGVGQTKLERYGEA
FIQLIDDYINREH
NT seq 1842 nt   +upstreamnt  +downstreamnt
atgacaactgcaattgctccatctgaatcaagctccaacacgcaaagtgcaaaaacacca
gaacgcattttaaaagatgtcttcggttacgacgcttttcgcgacggtcagggcgaagtc
attcaccgcgtatgtgaaggtaaagacgcactcgtgctgctgcctactggtggcggtaaa
tcgctgtgttatcaaattcctgcgctggtgcgaaatggaacagccattgttgtgtcgccg
cttatatcattgatgcaagaccaggtagagcagctgaaggccttaggtgtaaaagcagct
tacctaaactccacgttagaagccgatgagcaagcgggtattaacgacgcattgcaggca
ggaaagctagacctgctttatgtgtcacctgagcgtttgatgcagtactattttcagcag
tcgcttgccaatgccgacattgcgctttttgctatcgatgaggcgcactgtgtgtctcat
tgggggcacgactttaggcaagactatcgcgcccttggccaaattaaatctcgctttccc
tctattcccgtaatcgggctaaccgccaccgcagatacggcaacgcaagctgacatactc
acccagcttaacttgcacgcccctttggtttacaaaggtagtttcgatagacccaacata
cgctatcgggtaatgagcaagtacaaggcattcgaccaagtggttgcttatgttaagcag
caggaaggcagcggtattatttactgcaacagccgggcaaaagtagacgaccttcacgcg
aagctattcaaacaaggctttcgatgtgcggcctatcacgcagggatggatagcgacgag
agagagcttgttcagcgccagtttctcaatgacaaaatcgatatcgttgtagccacggtg
gcctttggcatgggcattaataaatctaacgtgcgctatgtggtgcatcacgatgtgccg
cgaagtgtagaaagctactaccaagaaacaggccgcgctgggcgagacggtctggaatct
gaagccttattattgtttgatgaaaaagacgctgcccgtgtaaagcagtggatagagcaa
ggtgagattgccgagcgcaaccaaatagaattgcagaaattcgcagcaatggaagctttc
tctgaagcccaaccctgccgtaggcaagtcttgctaaactacttttctcagtttagtgac
agcgcctgtggcaattgtgatatttgcctagacccgccaaagatgattgacggtttggtt
atcgctcaaaaagtactgtcttgtgtactgcggctttcgcagcaggcgtcaagccaatac
gtcatcgatgtgctgcgcggaaagcagcttaggcgacttcaagaagccgggcaccaccag
ctttctacctacggtataggtaaagataaatcagatagttattggcacaacattatcaat
caacttgtgcacaaaggccttattcgtgtagatattaccgctcatgcggccttgcggtta
acagaagcggcccgcccagttcttaaaggcgaagtggacgttcagcttgctgtaccgcga
cttgagtttaaaccggataagaaaaaagcgaagcaagcgcctgccaactacgacagaacc
ttattcactcgtcttaagcacttacggaaagtgttggcagaagagaatgaggtgccgccc
tacgtggtatttagtgacgcaaccttagttgatatggcgtgcaaactgcctaccacgcgc
aacactatgctagatgtgagcggtgtaggccaaaccaagctagagcgctacggcgaggcc
tttatccaacttatcgacgattatatcaaccgcgagcactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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