KEGG   Alteromonas macleodii Balearic Sea AD45: AMBAS45_16125
Entry
AMBAS45_16125     CDS       T02253                                 
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
amb  Alteromonas macleodii Balearic Sea AD45
Pathway
amb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AMBAS45_16125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amb03019]
    AMBAS45_16125
Enzymes [BR:amb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AMBAS45_16125
Messenger RNA biogenesis [BR:amb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AMBAS45_16125
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 ERCC3_RAD25_C P-loop_SecA AAA_25
Other DBs
NCBI-ProteinID: AFT96688
Position
complement(3789494..3790945)
AA seq 483 aa
MSFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL
QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL
RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQ
SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQ
QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALTDFKNGAIKVLVAT
DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET
LIQKLLPRETLEGFEPQQAVPVTTLSKPKKPKKPKKPKAPQGESGSEGKRSGENKKSGQR
QGNRSGSGNPRAGKSDSRNNSGGKPAGRRRSGSEGSAARRPAKRRSNPSNSTTNNRASNN
AKA
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgtcatttacccaattagggctcgctgaacccttgttaaaagctattgaaaaacgagga
tttagtacaccatcaccaatccaggaaaaggcaataccagaagtattgcaaggaaaggat
gtgttggcagctgcgcaaacgggaacagggaaaactgcaggatttggacttcctatttta
cagagattgatggaaggacaacctgtatctggcaacaatgttcgggcacttatcttaaca
cccacgcgagaacttgctgctcaggtagaagaaagcatcagagcgttcagtgagtttttg
ccgttaaaaactgccgtggtatttggtggggtaggtattaatcctcaaatgatgaagctg
cgtaaaggtgtggatgtgttaatcgctacgcctggacgattgcttgacctctaccagcaa
aacgctgttaagttttctcagcttgaagtgttggtattggatgaagccgatagaatgctt
gatatgggctttatccacgatattaagagagtactaaaactactgccacaagagcgtcaa
agcttactgttttcagccacgttttctgatgaaatcactgcgctggcgaaaacaataacg
cgcaaccctgtgagtatttcaaccgcaccagccaataccacggtagaagcggttcagcag
cacttagtaaccattgataaatccaaaaagacgaccgcgcttatttgtctgatcaaacag
cagaagtgggagcaggtgttagtatttagccgcacgaaacacggcgctaaccgtattgca
gaaaagctaactcggtcaaaaattccaagtgccgctattcacggtaataaaagccaagga
gcgagaactaaagcgcttactgactttaaaaatggcgcaattaaagtgttggtagccacc
gatatcgcagcacgcggcatcgacattagtgaattgcctatcgttgtaaacctggactta
cccaatacggcagctgattatgttcaccgaattggtcgtacagggcgcgcaggcgctagt
ggtcaggcgtggtcatttgtatgtgccgaagaactgcaaaacttgaaagatattgagacg
ctgattcaaaagctgcttcctcgtgaaacgttggaaggtttcgagcctcagcaagccgtg
cccgttaccacgctatctaagcccaaaaagcccaagaagccgaaaaagccaaaagcacca
caaggtgagagcggcagcgaaggtaaacgaagtggcgagaataaaaagtcgggtcaacgc
caaggtaaccgtagcgggagtggtaatccgcgcgcaggtaaatcggattcgcgcaacaat
agtggtggaaagcctgcaggccgaagacgctctggaagtgaagggagtgccgctagacga
ccagctaagcgcagaagtaatccgtcaaatagcaccactaataatagggcgtcaaacaac
gcaaaagcgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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