KEGG   Alteromonas macleodii Balearic Sea AD45: AMBAS45_17935
Entry
AMBAS45_17935     CDS       T02253                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
amb  Alteromonas macleodii Balearic Sea AD45
Pathway
amb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AMBAS45_17935 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amb03021]
    AMBAS45_17935 (rpoB)
   03400 DNA repair and recombination proteins [BR:amb03400]
    AMBAS45_17935 (rpoB)
Enzymes [BR:amb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AMBAS45_17935 (rpoB)
Transcription machinery [BR:amb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AMBAS45_17935 (rpoB)
DNA repair and recombination proteins [BR:amb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AMBAS45_17935 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 SPG4
Other DBs
NCBI-ProteinID: AFT97044
Position
complement(4217342..4221370)
AA seq 1342 aa
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQYGLEAAFRSVFPIK
SYSGSSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFDKVSVRIDKDKLMME
VVPDRLRGETAAFDIIDGEGNVVVETGRRISARHTRALEKAGLTELEVPADYLIGRVYAA
TYVNEDTGEVIVSANDELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFDNLFFSDERYDLSSVGRMKFNRRLGREELIGAGT
LDKEDIISVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVV
TDEIDYLSAIEEGQFAIAQANIALTEAGELVDDLIPCRHRGETTLMPKEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK
RGGVVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVA
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LTDEFEILADGIFARAQTALLRAGVDQAKLDSLPREKWFEIALNSEDAQLELDQIADQHA
EIKLDFDKKFEGKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKEQRELA
ELRDFLKKVYELGENHQEVDIDSFTDHEVRRLAENLRKGVPVATPVFDGARESEIKEMLK
LADIPESGQIALFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtattggaaattccataccttctttcaattcagcttgattctttcaaaaagtttattgag
atcgatgcagatgctcaatacggtttggaagcagcatttcgttccgtttttccaattaaa
agctactcaggtagttcagagcttcagtatgtaagctaccgcctgggagagcccgttttc
gacgttaaagaatgtcaaattcgcggcgtaactttctctgctccgttaagagtaaaacta
cggttagtgttgttcgataaagacgctgcgccaggtaccgtaaaagatattaaagaacaa
gaagtgtacatgggcgagatcccattgatgactgagaacggtacgttcgttatcaatggt
acagagcgtgttatcgtgtcacagctacaccgttcacctggtgtattctttgatcacgac
aaaggtaaaacccactcgtcaggtaaagtgctttataacgcacgtgtaattccttaccgt
ggttcgtggttagacttcgagtttgacccgaaagataacctattcgtacgtatcgaccgt
cgtcgtaagttgcctgcaacgattatcttacgcgcacttgaaatgacgtctgaagaaatc
ctagatactttctttgacaaagtaagcgtacgtatcgacaaagacaaactaatgatggaa
gtggttccagatcgcctacgtggtgagacggctgcttttgacatcattgacggtgaaggc
aacgttgttgttgaaacgggtcgtcgtatttctgcgcgccacacgcgtgcactagaaaaa
gccggtcttacagaacttgaagttccagccgattacctaattggccgtgtttatgcagct
acttatgtaaacgaagacacaggcgaagtgattgtaagcgcgaacgacgaactaaccctt
gaaaacctagcggcacttagccaagcgggtatcaaagagttcgaaacgctttacatcaac
gagctagatcacggttcatacatttcagatacgctacgtatcgattcttcaactaaccgc
cttgaagcactagttgaaatctaccgtatgatgcgtcctggtgagccaccaacgaaagat
gcagctgaaaccttgttcgataacttgttcttctctgatgaacgttacgacctatcttct
gttggccgcatgaagttcaaccgccgtcttggccgtgaagaacttattggtgctggtaca
ctagataaagaagacattatttctgtaatgaagcagctaataatgattcgtgacggtaaa
gacgaagtagatgacatcgatcacctaggtaaccgtcgtatccgttctgtaggtgaaatg
gcagaaaaccaattccgcgttggtcttgtacgtgttgagcgtgcagttaaagagcgtcta
agcttaggcgacctagacaacgtgatgccacaagatcttattaacgctaagcctatctcg
gctgcggttaaagagttcttcggttcatctcagctttctcagttcatggaccaaaacaac
ccgctatcagaagtaacgcataagcgtcgtatttctgcattaggcccgggtggtcttact
cgtgaacgtgcaggcttcgaagttcgagacgtacacccgacgcactacggtcgtctatgt
cctatcgaaacgccggaaggcccgaacatcggtctaattaactcattggcaagctttgcg
cgcaccaatgactttggtttccttgaaacacctttccgtcgcattgttgacggtgtggtt
acagatgaaatcgattatttatctgcaattgaagaaggtcagtttgcaatcgctcaggct
aacatcgcgttaactgaagcaggcgagttggttgacgacctaattccatgtcgtcaccgt
ggtgaaactaccttgatgccgaaagaagacatcaagtacatggacgtttcacctcagcaa
atcgtttcaattgctgcaagcattatcccattcctagagcacgatgatgcgaaccgtgca
cttatgggtgcgaacatgcaacgtcaggcagtacctacactacgcgctgataagccgcta
gttggtaccggtatggaaagaactatcgcggttgactcaggtgttactgtagttgctaag
cgcggtggtgtggttgattacgtagatgccagccgtatcgttattaaagtagacgaagat
gaaatgcttccaggtgaagcaggtatcgatatctacaacctgactaagtacactcgttct
aaccaaaacacgtgtatcaatcagaagcctacttgtagtgttggtgacccgattgttgca
ggcgacgtgctagctgatggtccttcaacagacctaggtgaccttgcacttggtcagaac
atgcgtatcgcgttcatgccgtggaatggttacaactttgaggattcaatccttatttct
gagcgtgtagcgcaggaagaccgttttactactatccacattcaagagcttagctgtatc
gctcgtgatactaagcttgggccagaagaaatttcttctgatatcccgaacgtgggtgaa
tctgcactaagcaagcttgatgaatcaggtgttgtttacattggtgcggaagtgaaaggc
ggtgacatccttgtaggtaaagtaacgcctaaaggtgaaactcagcttacgccagaagaa
aaactactacgtgcaatcttcggtgagaaagcgtctgacgttaaagatacgtctctacgt
gtacctaactctgttcacggtacggtaatcgacgttcaagtatttacccgtgacggtgta
gagaaagacaagcgtgcgctagaaattgaagatatgcagttacgtcaggttaagaaagac
cttactgacgagttcgaaattcttgcagacggtatctttgcacgtgcacaaactgcactt
ctacgtgctggtgttgaccaagctaagcttgacagcctgccgcgtgaaaagtggtttgaa
atcgcacttaacagtgaagatgcacagctcgagctagaccaaatcgctgatcagcatgct
gaaatcaaacttgatttcgataagaagtttgaaggtaagcgtcgcaagattactcaaggc
gatgacctagcacctggcgtgcttaagatcgttaaggtttatcttgcggttaaacgtcac
atccaaccgggtgataaaatggccggtcgtcacggtaacaaaggtgttatctcgactatc
cagcctgtagaagacatgccatacgatgctaacggtacgccggtagatatcgttcttaac
ccactaggtgtaccgtctcgtatgaacatcggtcagatcctagaaacgcacttgggtatg
gctgcacacggtcttggtgtgaagattgatcgcatgattaaagagcagcgcgagctggct
gaactacgtgacttcttgaagaaggtgtacgagcttggtgagaatcaccaagaagttgac
atcgatagcttcacagaccacgaagttcgtcgtctagcggaaaaccttcgtaagggtgtt
ccagtagcaacacctgtattcgacggtgctcgtgaatctgaaatcaaagaaatgctgaag
cttgctgacattccagaaagcggtcagattgctttgtttgacggtcgtaccggtcgcgaa
tttgagcgtccagttacggttggttacatgtacatgctgaaactgaaccacttagtagac
gacaaaatgcacgcgcgttctacgggttcttacagccttgttacacagcagcctcttggt
ggtaaagcacagttcggtggtcagcgcttcggtgagatggaagtgtgggcacttgaagca
tacggtgcagcatatacccttcaagaaatgcttaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaagaacatcgtcgatggcgaccacagaatggaacctggcatgcca
gagtcattcaacgtactacttaaagaaattcgctcgttgggtatcaacatcgagcttgaa
gaaaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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