KEGG T01269: AMED

Amycolatopsis mediterranei U32: AMED_2669

Entry

AMED_2669 CDS T01269

Gene name

lig

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

amd Amycolatopsis mediterranei U32

Pathway

amd03410	Base excision repair
amd03420	Nucleotide excision repair
amd03430	Mismatch repair
amd03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:amd03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:amd03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:amd03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:amd03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme

Other DBs

NCBI-GI:

300784575

NCBI-GeneID:

9436874

UniProt:

D8HY22

Position

complement(2854902..2855981)

AA seq 359 aa
MPLPLQPPLKPMLAKPAKAIPESGGLLFEPKWDGFRCIVFRDGDELYLQSRAEKPLNRYF
PEAVARLLDTLPPRVVLDGELVVARDGRLNFDALTERIHPAESRITLLSAEQPAEFVAFD
VLALGDDLLLDEPTSVRRERLTELAGDRFPLTPATTDPATARHWFELFEGAGLDGVIGKP
LDEPYTPGKRVMLKYKHLRTADCVLAGLRWHVDGGPGELVGSFLLGLYDEKGVLHHVGTV
GAFPKDRRRELAEELAPLITDGEDHPWGGRATGEAQRIPGGITRWRATEHEWVPLRPERV
VEVAYENTEGGMPSRFRHNARFKRWRPDREPASCDYSQLEEPARYDLDAVFRGQVVRTR

NT seq 1080 nt +upstreamnt +downstreamnt
atgcccctaccgctgcagccgccgctgaagccgatgctcgccaagcccgccaaggccatc
cccgaatccggtggcctgctgttcgaaccgaagtgggacggcttccgctgcatcgtcttc
cgcgacggcgacgagctgtacctgcagtcgcgcgcggaaaagccgctcaaccggtacttc
ccggaggccgtcgcgcggctgctggacaccctgccgccgcgggtcgtgctcgacggcgag
ctcgtcgtcgcgcgcgacggacggctgaacttcgacgccctcaccgagcgcatccacccc
gccgaaagccggatcacgctgctgtccgccgagcagcccgccgagttcgtcgccttcgac
gtcctggccctgggggacgatctgctgctcgacgaaccgacgtccgtccgccgcgaacgc
ctcaccgaactggccggcgaccggttcccgctcaccccggcgaccaccgatcccgccacc
gcgcgccactggttcgagctgttcgaaggcgccggcctcgacggcgtcatcggcaagccg
ctcgacgagccctacacccccggcaagcgcgtgatgctcaagtacaagcacctgcgcacc
gccgactgcgtgctcgccggcctgcgctggcacgtcgacggcggcccgggcgaactcgtc
ggctccttcctgctcggcctgtacgacgaaaagggcgtgctgcaccacgtcggcaccgtc
ggggcgttccccaaggaccgccgccgcgaactcgccgaagagctggcgccgctgatcacc
gacggcgaggaccacccgtggggcggccgggccaccggtgaggcccagcgcatccccggc
ggcatcacccgctggcgcgccaccgagcacgaatgggtaccgctgcggcccgagcgcgtc
gtcgaggtcgcctacgagaacaccgaaggcggcatgccgtcgcggttccggcacaacgcg
cggttcaagcgctggcggcccgaccgcgaacccgcgtcgtgcgactacagccagctcgag
gagccggcccgctacgacctcgacgccgtcttccgcggccaggtggtgcggacccgctaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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