KEGG T01269: AMED

Amycolatopsis mediterranei U32: AMED_4197

Entry

AMED_4197 CDS T01269

Gene name

lig

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

amd Amycolatopsis mediterranei U32

Pathway

amd03410	Base excision repair
amd03420	Nucleotide excision repair
amd03430	Mismatch repair
amd03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:amd03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:amd03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:amd03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:amd03450]

SSDB

Motif

Pfam:

DNA_primase_S

Other DBs

NCBI-GI:

300786083

NCBI-GeneID:

9438384

UniProt:

D8HR70

Position

4607745..4608644

AA seq 299 aa
MQVGERRLTLSNLEKVLYPRPGFTKGEVLDYYTRIAPVLLPHVRDRAMTFVRFPEGVTGT
SFFEKDVSRHAPDWVRTARLTVGGRGKEPEIVAYPLINDLPELVWAANLAALELHVHQWT
VGPGDERSTPDRLVFDLDPGPGATVVDCCRVAERLHDVLVEDGLTPVAKTSGSKGMQLYA
GIVTTDGGEPSQYAKALAERLAAETPDLVVARMTKNLRPGKVFIDWSQNNPFKTTVAPYS
LRGRDEPTVSAPVTWDEVRACRHVTHLRFTAGEVLARVEDIGDLFADLERTRVPILAFG

NT seq 900 nt +upstreamnt +downstreamnt
gtgcaggtcggcgagcgccggctgacgctgtcgaacctcgagaaggtgctctacccgcgg
cccggcttcaccaagggcgaggtgctcgactactacacgcggatcgcgccggttttgctg
ccgcacgtgcgcgaccgggcgatgacgttcgtgcggttccccgagggcgtcaccggcacc
tcgttcttcgagaaggacgtctcccggcacgcgccggactgggtccgcaccgcgcgcctg
accgtcggcggccgcggcaaggagcccgagatcgtcgcgtacccgctgatcaacgacctg
cccgagctcgtctgggcggccaacctcgccgccctcgaactgcacgtccaccagtggacc
gtcgggcccggcgacgagcgcagcaccccggaccggctggtgttcgacctcgacccggga
cccggcgcgacggttgtcgactgctgccgggtcgccgaacggctccacgacgtcctcgtc
gaggacgggctcaccccggttgcgaagaccagcggctccaaaggcatgcagctgtacgcg
ggcatcgtgacgacggacggcggtgagccgtcgcagtacgccaaggcgctggccgagcgg
ctcgccgccgagacgccggacctcgtcgtggcgcggatgacgaagaacctgcgcccgggc
aaggtcttcatcgactggagccagaacaacccgttcaagaccacggtggcgccgtactcg
ctgcgcgggcgcgacgagccgacggtctcggctccggtcacgtgggacgaggtccgcgct
tgccggcacgtcacgcacctcaggttcaccgcgggcgaagtcctggcgcgcgtcgaggac
atcggagatctgttcgccgatctggaacgcacccgcgtcccgattttggcgttcggctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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