KEGG T01269: AMED

Amycolatopsis mediterranei U32: AMED_8064

Entry

AMED_8064 CDS T01269

Gene name

lig

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

amd Amycolatopsis mediterranei U32

Pathway

amd03410	Base excision repair
amd03420	Nucleotide excision repair
amd03430	Mismatch repair
amd03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:amd03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:amd03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:amd03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:amd03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

300789878

NCBI-GeneID:

9442203

UniProt:

D8HLT9

Position

8869945..8871477

AA seq 510 aa
MLLSELVRASAELAATRSRKAKIALLAELLRAAEIAELPTVIAYLTGQTAQDRLGAGWRT
LAALGAGAAAGPVASVLEVDAALTAAAGVAAGTGSSTRRQEVLRALFERLTKDEQQFLFR
LVTGELRQGALEGVMVDAIAAAAEVPAEDVRRAFMLSGKLGVTGVAAMTGGQAALAEFRL
TLGTPIKPMLASPAESLDEAVAEHAEAIVEYKMDGARIQVHRQGDEVHVWTRTLREITGS
VQELVDLVRALPCESVVLDGETLALTDAGRPRPFQDTMSRFGSTREEQVKALLLRPYFFD
CLHLDGVDLLDAPLSERNAALRKVAGAHVIPGEVGTAGAAAVLEAAMEAGHEGVMVKDLA
APYAAGRRGRAWLKVKPVHTIDLVVLAAEWGHGRRTGTLSNLHLGARDPDGGPPIMVGKT
FKGMTDELLAWQTRTFQEIETHRDEWTVYVRPEVVVEIELDSAQVSTRYPGGLALRFARV
VRYRPDKDPADADTIDTVRGLLHGDRSEGS

NT seq 1533 nt +upstreamnt +downstreamnt
gtgttgctgagcgagttggtccgcgcgtccgccgaactggcggcgaccaggtccaggaag
gcgaagatcgccctcctggccgaactgctgcgcgcggcggagatcgccgagctgcccacg
gtgatcgcgtacctgaccgggcaaacggcgcaggacaggctgggtgcgggctggcgcacc
ctcgccgcgttgggcgccggcgccgcggccggaccggtggcctcggtgctggaggtggac
gcggcgctgaccgcggcggccggtgtcgcggccggcacgggctcgtcgacgcgccggcag
gaagtgctgcgggcgttgttcgagcggctgacgaaggacgagcagcagttcctgttccgg
ctggtcaccggcgaactgcggcagggcgcgctggagggcgtgatggtcgacgccatcgcg
gccgcggccgaggtgcctgccgaggacgtgcggcgggccttcatgctgtccgggaagctc
ggcgtcaccggggtcgcggcgatgaccggcgggcaggccgcgctggcggagttccggctc
acgctcggcacgccgatcaagccgatgctggcgtcgccggcggagtcgctggacgaggcc
gtcgccgagcacgcggaggcgatcgtcgagtacaaaatggacggtgcgcggatccaggtg
caccgccagggcgacgaggtgcacgtctggacgcggacgctgcgcgagatcaccggcagc
gtgcaggaactggtggacctcgtgcgggcgctgccgtgcgagtcggtggtgctcgacggc
gaaaccctggcgctgaccgacgccgggcggccgcggccgttccaggacacgatgagccgg
ttcggcagcacccgcgaggaacaggtcaaggcgctgctgctgcggccgtacttcttcgac
tgcctgcacctcgacggcgtcgacctgctggacgcgccgctgtcggagcgcaacgcggcg
ctgcgcaaggtcgccggggcgcacgtgatccccggcgaggtgggcaccgcgggcgcggcc
gccgtgctggaggcggcgatggaagcgggccacgaaggggtgatggtcaaggacctggcg
gcgccgtacgcggccgggcggcgcgggcgggcgtggctgaaggtcaagccggtgcacacg
atcgacctggtggtgctggcggcggagtggggccacggccggcgcaccggcacgttgtcg
aacctgcacctgggcgcccgcgacccggacggcggcccgccgatcatggtgggcaagacg
ttcaagggcatgaccgacgagctgctggcgtggcagacccggacgttccaggagatcgag
acccaccgcgacgagtggacggtgtacgtccggccggaggtcgtggtggagatcgagctg
gacagcgcgcaggtgagcacgcgttacccgggcggtctggcgctgcggttcgcccgggtg
gtccgctaccggccggacaaggacccggccgacgcggacacgatcgacacggtccgcggc
ctgctgcacggcgaccgttcggaagggagctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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