KEGG   Astyanax mexicanus (Mexican tetra): 103025901
Entry
103025901         CDS       T05042                                 
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase Midline-1-like
  KO
K08285  midline 1 [EC:2.3.2.27]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    103025901
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:amex04121]
    103025901
Enzymes [BR:amex01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103025901
Ubiquitin system [BR:amex04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    103025901
SSDB
Motif
Pfam: COS SPRY zf-B_box fn3 zf-RING_UBOX zf-C3HC4 zf-C3HC4_4 zf-C3HC4_2 zf-C3HC4_3 Pur_ac_phosph_N zf-RING_2 zf-RING_5 PRY
Other DBs
NCBI-GeneID: 103025901
NCBI-ProteinID: XP_022521344
Ensembl: ENSAMXG00000001793
Position
Unknown
AA seq 678 aa
MDTLESELTCPICLELFDDPLLLPCAHSLCFNCAQRILITQCASTPESSHPPSAFQCPTC
RYVITLNQRGLEGLKRNVTLQNIIERFQEASLSGPNSPSETRRCNRERDRESSPFGLTDA
PAMSAKESVQCQFCDQDPPQDAVKTCITCEVSYCEECLRATHPNKKPFTGHRLTEPLPDS
RLRGLACSEHADEKVNMYCXTDEVLICSLCKLVGRHRDHQVAALGERYEKLKQGLESSLS
SLVKRNNELEGLMGKLIQTCQHVEMNASRQENKLIEECDLLIDIIQQRRQIIGTKIKEGK
VVRLRKLAQQISSCKQCIERSSSLITQADQVLKETDHARFLQTARNIAERVSMATTSSQI
LIPEVKLNDTFDTFALDFSREKKILEGLDYLTAPNPPVIREELCTASYDTITVHWTAEDE
FSVVSYELQYTIFTGQTNVVSLCNSADSWMLVPNIKQNHYTVHGLQSGTKYIFVVKAMNH
AGSRSSEPGKLKTNSQPFKLDSKSAHKKLKVSHDNLTVERDETSSKKSSQDRFGSTGSYG
VTGNVYIDSGRHYWETLIGGSTWFAIGIAYKSAPKHEWVGKNSASWVLSRCNNSWVVRHS
GKELAVDPSPHMRRIGVLLDYDLGSLAFYDAAGTQHLHTFDITFSQPVCPVFNVWNKCLT
ILTGLPIPDHLEINDPRA
NT seq 2037 nt   +upstreamnt  +downstreamnt
atggacacattggagtcggagctgacctgcccgatttgtctggagctgtttgatgaccct
ctgctgctgccctgcgcccacagcctgtgctttaactgtgcccagcgcatcctgatcacc
cagtgcgcctcaaccccagaatcttcgcatcctccatcagccttccagtgcccgacctgc
cgctatgtcatcaccctcaaccagcgaggcctagaggggctcaagcgtaacgtcaccctg
cagaacatcatcgaacgcttccaggaagcctctctgagcggacccaactcgccgagcgaa
actcgacgctgtaaccgagagcgcgatcgtgagagttcaccgttcggtttaactgacgct
ccagccatgagtgctaaagagtcagtgcagtgccagttctgcgatcaggaccctcctcag
gacgcggtaaaaacctgtatcacctgtgaggtgtcgtactgcgaggagtgcctgagggcc
acgcacccaaacaagaagcccttcactggccaccggctgaccgagccgctgccggactct
cgactccggggtctggcctgttctgaacatgcagacgagaaggttaacatgtactgcnat
accgacgaggtcctgatctgctctctgtgtaagctggtgggacgacacagagaccatcag
gtggcggcacttggagagagatacgaaaaacttaagcaaggactggaatccagtctgagc
agcctggtcaagcgcaataatgagctggagggtctgatggggaagctgatccagacctgt
cagcatgtcgagatgaacgcatcccgacaggagaacaagctgatagaggagtgcgacctt
ctgatcgacatcatccagcagcggagacaaatcatcggaaccaagataaaagagggaaag
gtggtccggctgcgtaagctggcgcagcagatatccagctgtaagcagtgcatcgagagg
tcgtcctccctcatcacccaggctgatcaggtgcttaaagagacggatcacgctcgcttc
ctgcagaccgcacgcaacatcgcagagagagtttcaatggcaacaacttcctcacagatc
ctgatcccagaggtcaaactgaacgacacgtttgacacctttgcactggacttcagcaga
gagaagaagatcctggagggtctggattatctaaccgccccgaatccgccggtgatccgt
gaagagttgtgcacagcgtcctacgacactatcacagtgcactggacagcggaggatgag
ttcagtgttgtctcctacgaactgcagtacacaatcttcaccggacagaccaacgtcgtc
agtttgtgtaactcggctgatagctggatgctggtgcccaacatcaagcagaatcactac
acggttcacggcctgcagagcggcaccaagtatatcttcgttgtgaaggccatgaaccac
gccggcagccgcagcagtgaacccggcaaactgaagaccaacagtcagccgtttaagctg
gactctaaatccgctcacaagaagctgaaggtttctcatgataacctgacggtggagaga
gacgagacatcttctaagaagagctctcaggaccggttcggaagcactgggagttacggg
gtcactgggaacgtctacatcgacagcggacgccactactgggagactctgattggagga
agcacatggttcgccatcggcatcgcctataaatctgcaccgaagcacgagtgggtgggg
aagaactcggcctcgtgggttctgtcccgctgcaataactcctgggtggttcggcacagc
ggtaaagagctggcggtggatccttcgccccacatgcggcgcatcggcgtcctgctggac
tacgatctgggatcgctggcgttttacgacgctgcaggaacgcagcacctgcacaccttc
gacatcaccttctcccagcccgtctgccccgtctttaacgtctggaacaagtgtctgacc
atcctgaccggcctgcccatacccgaccacctggagattaatgacccgcgggcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (13)   
   Pfam (13)   
All databases (50)   

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