KEGG T05042: 103026472

Astyanax mexicanus (Mexican tetra): 103026472

Entry

103026472         CDS       T05042

Name

(RefSeq) roundabout homolog 1 isoform X1

K06753

roundabout, axon guidance receptor 1

Organism

amex Astyanax mexicanus (Mexican tetra)

Brite

KEGG Orthology (KO) [BR:amex00001]
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:amex04515]
    103026472
Cell adhesion molecules [BR:amex04515]
Immunoglobulin superfamily
  ROBO family
   103026472

SSDB

Motif

Pfam:

I-set Ig_3 ig Ig_2 fn3 V-set C2-set_2 Pur_ac_phosph_N Ig_5

Other DBs

NCBI-GeneID:

103026472

NCBI-ProteinID:

XP_022535353

Ensembl:

ENSAMXG00000012031 ENSAMXG00000012084

Position

1:7317013..7779860

AA seq 1680 aa
MRIAWSEATAFIIITLLRLGQSEVVESSLVPDTGTPEAPKEGVTQAPASGHDEDNTLGYT
GTRLRLEDYPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDRDNSRS
HRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVSHNASLEVAILRDEFRQNPS
DVMVAAGEPAVMECQPPRGHPEPTISWKKDGVNVDDRDERITIRGGKLMITNTRKSDAGK
YVCVGTNMMGERESEIAELTVLERPSFLRRPSSQSVLVDQSVEFRCEAQGDPVPTVRWRK
EDGELPKGRFEIRDDHTLKLKRLSSADAGSYTCLAENMMGKTEATATLTVHVVSVPPVFA
VRPRNQVVGVGRTVTFQCEATGSPQPAIFWQREGSQNLLFSSQPPQPSSRFSVSQTGDLT
ITGIERGDAGYYSCQALNIAGSVITKALLEVTDIISDRPPPVVRQGPTNQTVAVDGTVVL
GCQATGTPTPTILWRKDGVLVSTHDSRLKLLDTGALQIRYAKLGDTGMYTCIASTPSGEA
SWKAYLEVQEFGVAVQPGRPTDPNLIPSAPSKPEVTDVTRSTVSLTWKPDLNSGATPTSY
IIEAFSHASGSSWQTLAEHVRTESYVLKGLKPSAVYLFLVRSANAYGLSDPSPISDAVKI
QDVPPTSQGVEHGQIQRELGDVVIHLHNPTILSSSSIRVQWTVEQQSQYIQGYKVMYRVS
SETGQTRNDWAVFEVRTPGEYTALITQLRKGTTYDFKVRPFFNEFQGTDSDIKVGKTLEE
APSAAPKEVKVTENGDNGTTILLSWQPPPEDEQNGVVQEYRIWCLGNESRYHINRTVDGS
TFSVVISGLVPGVRYSVEVAASTGAGPGVKSEITYFQLDSSGRMTQSVVDPENTLSQQIS
DVVRQPAFIAGIGAACWIILMVFSIWLYRHRKKRSGLSTSYAGIRKVPSFTFTPTVSYQR
GGEAVSSAGRPGLLNISEPATQPWLADTWPNNCSNQNDCSINCCTAGNGNSDSNLTTYSR
PADCIANYNNQMDSKPSNLLAPDSGLYGDVDLSNKINEMKTFNSPNLKDGRLGPGQPTPY
ATTQLIQSSLSSGTGGSADLNDKQSWKSCQSTPQKQQDVTSQMQYNIMEQNRLNKDLYRV
GDSVMPATIPYNQPPEPTPVGTYSSSDRGSSTSGSQGQKKGVRTPKMPKQSTMNWTDLLP
PPPVSPPPCQDYGISIDDSYEAELQCPVPPSRMYLQPDELEEEEAEMERGPTPPLRGTAS
SPAAVSYSHQSTATLTPSPQEELQPMLQENPDGLHERRRLLVSPPAPPRPLSPPHTYGYI
SSPLGLDTDGLEEEEDEEEGDETDAEVARVHQRRHQQHPSAQQHVGQQRLLLRGLEQTPA
SSTCDLESSVTGSMINGWGSASEEDNASSGRSSVVSSSDGSFFTDADFAQAVAAAAEYAG
LRVAKHSGKGQQQQTVPGARKYQNLPSGHRPASPLSTDSNMSAAVAQRRPQKKQKQQAAG
HSGYQRREVFSDDLPPPPIPPPAMLKSPTHPGKGAPDGGLGAVSPRSSSAEGREKRSASG
GPKSRDPSDTRTSSSERREGQDRQRVQRAGKGSKQEPTGGSKARHHPEDILPYSRPSFPA
VHSPRGDRDPSSSSSMSSRGSGGRRRGEGVPGSRRNPQEIGLNTIGAFQPGDEELEMVES

NT seq 5043 nt +upstreamnt +downstreamnt
atgcggatcgcatggtcagaagccacagccttcattatcatcacattgctacggcttggg
cagtcagaagtagtggagagctctttggttccagacacgggcactcccgaggcgcctaaa
gagggggttacgcaggcccccgcctcaggacacgatgaagacaacaccctgggctacaca
ggaacccgtctgcggctggaagattaccctccccgcatcgtggagcacccctccgacctc
atcgtgtccaagggcgagccggccaccctcaactgcaaggccgaggggcggcccacgccc
accgtggagtggtacaaggacggagagagggtggagacggaccgggacaactcgcgctcc
caccgcatgctgctgcccagcggctcgctcttcttcctcaggatagtccacggccgccgc
agcaaaccggacgaaggctcttacgtctgcgtggcccgaaactacctgggagaagccgtc
agccacaacgcctcgctggaagtagccattctccgggatgagttcaggcagaaccccagt
gatgtgatggtagcagcgggtgagccagcagtaatggagtgccagccccctcgtggtcac
ccagaacccaccatctcctggaagaaagatggcgtcaatgtagacgacagagacgagcgc
ataacgatacgaggtggaaagctgatgatcaccaacacgcggaagagtgatgctgggaag
tatgtgtgcgtggggaccaacatgatgggcgagcgagagagcgagatagctgagctcacg
gtgctggagagacccagttttttacgcaggccaagcagtcagtctgtgctggtggatcag
agcgtggaattcaggtgtgaagcacaaggagaccccgtgcccaccgttcgctggaggaaa
gaggacggagagctgcccaaggggaggtttgagatccgggatgatcacacgctgaagctg
aagcggctgagctcggcagacgccggctcctacacctgcctggccgagaacatgatgggg
aaaacggaggccacggccaccctcaccgtccacgttgtgtctgtgcctccagtgtttgcg
gtgcgaccgaggaatcaggtggtcggggtgggccgcacagtgacctttcagtgtgaggcc
accggcagcccccaaccagccatcttctggcagagagagggcagccagaacctgctgttc
tcctctcagccgccacagccgtccagccgcttctctgtctctcaaacgggtgatcttacc
atcactggcatagaacgaggggacgccggatattacagctgccaggccctcaacattgcg
ggcagtgtgatcaccaaagctctgctggaggtcacagacatcatttccgacagaccgcca
cccgttgttcgtcaaggtcccaccaatcagacagtggctgttgatgggacagtagttctg
ggttgccaggcgaccggcacacctacccccaccatcctgtggagaaaggacggggtgctg
gtgtccactcacgactctcgcctgaaactgttggacacaggggctctacagatacgctat
gccaagcttggagacacgggcatgtacacctgtatagcttccaccccgagtggagaggct
tcctggaaggcttacctggaggtgcaagagtttggtgttgcggtccaacctggtcgaccc
accgaccccaacctgatccccagtgccccctccaaacctgaggtgaccgacgtcactcgc
tccacagtgtctcttacatggaagcctgacctcaattctggagccacacccacctcttac
atcatcgaggctttcagccatgcgtcgggcagcagctggcagacgctggcggagcacgtg
aggacggagagctacgtgctgaagggtctgaagcccagcgccgtctatctgttcctggtg
agatcagctaacgcctacggcctcagtgaccccagccccatcagcgacgccgtcaaaata
caggacgttcctccgaccagtcaaggagtggagcacggtcagatccagagggagctgggg
gatgtcgttatccacctccacaatcccaccatcctctcctcctcctccattcgagtgcag
tggaccgtggaacaacagtcgcagtacatccagggctataaggtgatgtaccgggtgtcc
tctgagacgggtcagacccggaacgactgggctgtatttgaagtgcgaactcctggagaa
tatacagcactgatcactcagctccgcaagggcaccacctacgacttcaaagtgcggcct
tttttcaacgagttccagggaacggacagcgatatcaaagtgggcaagactctggaagaa
gcacccagcgccgcccccaaggaagtgaaggttacggagaatggagacaacggcacaacc
atcctgctgtcctggcagccccccccagaggacgagcagaacggagtagtccaggagtac
aggatctggtgtttagggaacgaaagccgctaccacatcaaccgcacagtggacgggtcc
accttctccgtggtcatctcaggcctggttccgggcgtccgctacagcgtggaggtggca
gccagcactggagccggacctggagtgaagagtgagatcacttacttccagctggactcc
tcagggcggatgacacagtcagtagtggacccagagaacactctctctcagcagatctca
gacgtggtccggcagccggccttcatcgcaggcatcggtgcagcctgctggataatcctc
atggtcttcagtatctggctgtaccgccaccgcaagaagagaagcggcctgagcaccagc
tacgccggcatccgcaaagtgccatccttcaccttcacacctactgtttcctaccaaaga
ggaggagaggctgtcagcagtgctgggaggccgggccttttgaacatcagtgagccagcc
actcagccttggctagcagacacatggcccaacaactgctccaaccagaacgactgcagc
atcaactgctgcactgcaggcaacggcaacagcgacagcaacctgaccacctacagccgc
cccgctgactgcatcgccaactacaacaaccagatggacagcaagcccagcaacctgctg
gcgccagactcgggcctgtacggcgacgtggacctctccaacaagatcaacgagatgaag
accttcaacagccccaatctgaaggatgggaggctcggaccggggcagcccaccccttat
gccacaacccagctcatccagtccagcctgagcagcggcaccgggggcagcgccgacctc
aatgacaagcagagctggaagagctgccagagcacgcctcagaagcagcaggacgtgacg
tcacagatgcagtacaacatcatggagcaaaacaggctgaacaaggatctctacagagta
ggggacagtgtaatgccagccaccatcccctacaaccagcccccagagcccacccctgtt
ggcacctacagcagctctgacagaggcagcagtacatcaggcagtcaagggcagaagaaa
ggagtgcggacaccgaaaatgcccaagcagagcacgatgaactggaccgacctgctgccc
cctcctcccgtcagcccaccgccatgtcaggactacggcatttctatagacgacagctat
gaagcagagctgcagtgtccagttcctccatcccgcatgtacctccagcctgacgagctg
gaggaggaggaggcggagatggagaggggtcccacgccccctctgcgcggaacagcctcc
tcccccgctgcagtgtcctacagccaccagtccactgccacactcaccccgtccccacag
gaggagctgcagcccatgctgcaggagaacccagacggcctgcacgagcgcagacggctc
ttagtcagcccaccagctccccctcggcccctctcccctccccacacatacggctacatc
tccagtccgctgggtctggacacggatggccttgaggaagaggaagatgaggaggaaggc
gatgagacggatgcggaggtggcccgggtgcaccagcggcgccaccagcagcacccttct
gcccagcagcatgtgggtcagcagaggcttctcctgcgtgggctggagcagacgcctgcc
tccagcacctgcgatctggagagctcggtcaccggctccatgataaacggctggggctca
gcgtctgaggaggacaacgcctcgtccggccgctccagcgtggtcagctcctctgacggc
tcctttttcactgatgcagactttgcccaggcggtggcggcggccgcggagtacgccggc
ctccgagtggcaaagcattctggaaaaggccagcagcaacaaacagtgcctggagcacga
aaataccaaaacctgccttcaggccaccgtccagcaagtccattgtctacagacagtaat
atgagtgcagctgtcgcccagagaagacctcagaagaaacagaaacagcaggcggcaggg
cactcaggataccagcgcagagaggtcttctcagatgacctgcctcctccacccatccca
cctccagccatgctcaagtctcctacccacccagggaagggagcaccggacggaggactg
ggggcggtgtcccccagatccagttcagccgagggcagagagaagagatcggcttcaggg
gggccaaagtccagagacccctcggacacgcggaccagctcgtcagaacgacgggagggt
caggaccgacagagggtccagagagcggggaaaggcagtaaacaggagccaacaggaggg
agcaaggcccgccatcatccagaggacatcctgccctacagccggccctccttcccagcc
gtccacagccccagaggagaccgggatcccagctcctccagctccatgtcctccagaggc
tctgggggcagaaggagaggagagggagtccccgggagccgcagaaaccctcaagaaatc
ggcctcaacaccataggagcctttcagcctggagacgaagaactggagatggtggaaagc
tga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (2)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (9)   
   Pfam (9)   
All databases (64)   

Download RDF

DBGET integrated database retrieval system