KEGG   Astyanax mexicanus (Mexican tetra): 103038120
Entry
103038120         CDS       T05042                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X2
  KO
K06237  collagen type IV alpha
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex04510  Focal adhesion
amex04512  ECM-receptor interaction
amex04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:amex00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    103038120 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    103038120 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103038120 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:amex04147]
    103038120 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:amex00536]
    103038120 (col4a6)
Exosome [BR:amex04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   103038120 (col4a6)
Glycosaminoglycan binding proteins [BR:amex00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103038120 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 103038120
NCBI-ProteinID: XP_015459467
Ensembl: ENSAMXG00000015997
Position
16:complement(35735172..35865931)
AA seq 1705 aa
MKLWVCVVAVLWSLQSAHAGTENSGPCEGRDCSAGGCPCLPIKGSRGRPGALGSAGPSGP
EGFIGGPGPMGPKGEKGHAGRSGATGQKGDKGPPGVPGFPANNGVPGHPGQEGPRGLPGA
DGCNGTRGDPGFQGGFPGLPGRPGAPGLPGFKGQKGEPVYIPLGITGPPGPSGQVGPIGP
VGYPGPPGPPGPPGPTGSSGVGYKGETGEKGDAGPPGLRGPPSALLGSPAISTINKGEKG
DVGAPGDPGQTPVNGLVEFVGYPKGDKGAKGDIGFAGEPGIQGRPGPPGPFGFPGEYGEK
GIPGLPGQRGAPGLNGPRGEDGLRGYPGDSGFPGQFGFPGPKGYRGEQGPPGPPAYSSGP
GTFVQGPTGDPGYDGFPGADGDVGLAGLPGEPGAPGSDLPGSPGLPGLPGTPGNKGEKGN
LGRTAYGPEGLPGGDGLPGPPGRPGPPGRPAPFGPLPSGVTGTPGVKGVRGPTGDKGGKG
FKGEIGDCNCLGGGTIGAQGPPGNPGFPGFPGGNGQKGDIGDTGTLGFNGPQGPRGRTGG
RGYTGRKGEKGEPFFAGGFVQKGDMGEPGPRGPSGEIGKPGRDGTYGFPGQPGPPGDAGF
GLPGDRGFPGFPGGKGRPGLAGEPGIGYAGVPGVQGLPGDPGINGIPGQPGLPGARGESC
GQAGLNEASIGEGGQTLPCIITGEVGSPGFPGLPGVPGPKGQPGPSGLSGRPGFDGVKGE
RGSPGIGGQPGPQGFIGQRGDPGLPGLTSPGTPGAPGKDGRPGFPGRKGEPGEALGTTPG
TQGFPGQPGLPGDKGQQGTPGLPGGPGFDGRFGVPGLKGMQGDAGFPGPQGPPGPPGYVP
PSDPVRGPPGPPGFPGPRGFPGLKGERGDPGRSVSGSKGNSGPRGIPGRQGEVGRTGSPG
LGQNGIPGRPGTKGQKGFPGLLGFTGLPGRPGDGGLPGGKGLPGIPGREGRPGENGRTGT
KGDRGEPGRPGPAPPLFPEGILDKGEKGIPGITGVPGFPGQRGDKGFPGSPGRPGQPGQP
GDPIQAKGLPGDPGFPGRQGLAGFSGIKGAAGVLGFPGMPGPKGDNGVPGLPGLPGSPGQ
PGVKGQKGDATGIPGAPGTKGLVGNAGFPGGPGASGEPGAPGFNGISGLPGQKGLLGDPG
RPGFSGLPGLPGTMGLPGYPGDKGRSGESGRPGFPGRPGEKGLPGSPGLDGLNGLQGPKG
QQGVPGVTEGGRTGAPGMDGLKGERGSSLPGLPGFSGAKGVRGQDGLPGQPGFQGPPGPR
GLPSSSGIPGPVGDPGLPGLDGGQGFSGPPGPPGPAGPGTIQGDRGDAGIPGFSGTPGKR
GEPGFPGRFGLPGNPGFKGMKGDPGNSGIPGPQGPAGDPGQYGYKGPKGSQGKRGSPGLP
GIFLPPEDVQIPNGDFGPEGFSGGPGLAGSAGQPGSPGFPGPKGKIGSPGKPGRSGPAGS
PGIVGDPGSPGFQGLTGYKGFPGKQGLPGRPGLPGRSIGIGYTLVKHSQSSQVPMCPQGM
AKLWEGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTIPFLYCTTTELCYYASRNDKSYWLS
TTAPIPMMPVAKQQITEYISRCSVCEAPSQAVAVHSQDTSIPPCPSGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCFFFNNKHSFWLTTVDRDRQFVQG
PESETLKGDQYRTRISRCQVCMKIL
NT seq 5118 nt   +upstreamnt  +downstreamnt
atgaagctgtgggtttgtgtggtggctgtgctctggtcgctgcagtctgcacatgcgggg
acggagaattctggaccatgtgaagggcgtgactgtagtgcgggaggatgtccctgtctc
ccaataaaaggcagcaggggtcgccctggagccttggggtcggcggggcccagtggtcct
gagggcttcattgggggtccaggacctatggggcctaaaggagaaaaaggccatgctgga
cggtcaggggcaactggacaaaagggggataagggtcctccaggtgttcctggatttccg
gctaataatggcgttcctggtcacccaggccaggaaggaccacgcggacttccaggtgcg
gacggctgtaacggaacacgcggtgaccccggctttcaaggaggtttcccaggcctacct
ggaagacctggagctccagggttacctggttttaaagggcagaaaggagaacccgtgtat
attcctttaggaattacgggtccacctggtccttcaggtcaagttggtcccattggtcct
gttggttaccccggccctcctggtcctccgggtcctcctgggccaacaggaagctcaggt
gtgggttataaaggagaaacaggagagaagggtgatgcaggtccaccaggactcaggggc
cctccgtccgctctgttaggctcgccagctataagcactatcaacaaaggagagaaggga
gacgtgggggcgcccggagacccaggacagactccagtcaatggacttgtggagtttgtt
ggatatccaaaaggagacaaaggagctaagggtgacattggctttgctggagaacctgga
atccaaggaagacctggaccaccaggcccatttggtttcccgggagaatatggtgagaaa
ggaattcctggactgccaggacaacgaggtgctccaggtctaaatggaccacgtggtgaa
gatggattaagaggatatcctggtgattctggctttcctggacaatttggctttccaggt
cctaaaggctaccggggagaacaaggaccaccagggccacctgcctatagcagtggacca
ggaacatttgtgcaaggtcccacaggtgatcctggttatgatgggtttcctggtgctgat
ggagatgtgggtctagcagggcttcctggagaacctggcgcccctggatctgaccttcca
ggctctccaggtctccctgggttgcctggtactcctgggaataagggagaaaaaggaaac
cttggacgcacagcctatggtcctgaaggtcttcctgggggtgatggtttacctggaccc
ccaggccgtcctggacctccgggcagacctgcaccctttggacctttgccaagtggcgtt
actggaactccaggtgtaaaaggtgtcagagggccaacaggagataaaggtggcaaaggg
ttcaaaggtgaaattggagattgtaattgcttgggtggaggaaccattggagcacagggt
ccaccggggaatccagggtttccaggtttccctgggggaaatggacagaaaggagacatc
ggtgacacaggaactttaggattcaatggaccacaaggcccacgtggtcgtactggagga
aggggctatactggtcgtaaaggagaaaagggggagccttttttcgcaggtggttttgtt
caaaaaggtgatatgggtgagccggggcctcgtggtccttcaggtgaaatcggcaaacct
ggcagagatggaacatatggttttccaggacaaccgggaccaccgggagatgcaggtttt
ggattacctggagacagaggttttcctggatttcctggaggaaaaggtcgtcctggtctt
gccggtgagcctggcattggctatgcaggtgttcctggtgtccagggtttgccaggtgac
cctggcatcaatggaattccaggacaacctggtcttccaggggcacgaggtgaaagctgt
gggcaggcggggcttaatgaggcctctatcggagagggaggacaaacactaccttgcata
attactggagaagttggaagtccaggtttccctggactgccaggagtgccaggccctaag
ggtcagcctggtccatctggattaagtggacggccaggttttgatggagtaaagggtgaa
agaggaagcccaggcattggaggtcaacctggaccacaaggattcattggacaaagaggg
gacccaggtttaccaggtctcacaagccctggaacaccaggtgctccagggaaggacggt
cgtcctgggtttccaggaagaaaaggagaacctggtgaggcattagggaccactccagga
acccaaggatttccaggccagcctggactacctggtgacaaaggtcaacaaggcactccc
ggattgccaggcggccctggttttgatgggcgctttggtgtcccaggtttgaagggtatg
caaggagatgccggttttccaggcccgcaaggaccaccaggtccaccaggttacgttcct
cccagtgatccagttcgagggcctcctggccctcctggattccccgggcctagaggtttt
cctgggctgaaaggtgaaagaggagacccaggacgctctgtaagtgggagtaaaggcaac
tctggacctcgtggaattcctggccggcaaggagaagtggggcgaactggttcaccaggc
ctaggacagaatggaataccaggcagaccagggacaaaaggtcagaaaggttttcccgga
ctgttgggattcactggactacctgggcgcccaggtgatggaggactgccaggaggtaaa
ggtcttcctggaatcccagggcgggaaggtcgacctggagaaaatggaaggaccggaact
aaaggggaccgtggggagcctggcagaccaggacccgccccaccactctttccagaaggt
attctggacaaaggtgaaaagggtattcctggaattactggtgtgccaggattcccagga
caaagaggtgacaaaggattcccagggtcgcctggtcgtccgggccaaccaggtcagcca
ggggatcctatccaagccaagggtctccctggtgatccaggattcccaggccgtcaaggt
cttgctggcttttctggaattaaaggggctgctggtgttctaggattccctggcatgcct
ggacccaaaggtgataatggagttcctggtttacctgggttgcccggtagcccaggccaa
cctggagttaaaggtcagaaaggggacgccactggaattcctggagcccctggaacaaag
ggattggtgggaaatgctggatttcctggaggtccaggtgcttctggtgaaccaggtgct
cctggttttaatggaatttctgggttacctgggcagaagggtctactaggagatccagga
aggccaggattcagtggtttgccagggcttccaggcaccatgggtctccctggataccca
ggagacaaggggcgcagtggtgagtcaggacgccctggatttccaggccgaccgggagag
aaaggtttacctggctcccctggtttagatggtctcaatggacttcaaggacccaaaggt
caacaaggagtacctggggtgactgaaggtggtcggacgggagcccctggaatggatggt
ctgaaaggagaaagaggctcatcacttcctggactaccaggattttctggagcaaagggg
gtcagaggacaggatggtcttcctggtcagccaggattccagggtcctccaggccctcgt
gggctccccagttcctctggtatccctggtcctgtaggagatcctggtctacctggactg
gatggaggacaaggtttttctggcccccctggtccacctggtccagcaggcccaggaacc
atccagggtgacagaggagatgccgggatccctggattctctggaacgcctggaaaacgt
ggtgaacctggatttcctggaaggtttggtttgccaggaaaccctggatttaaaggaatg
aaaggtgaccctgggaatagtgggataccaggaccacaaggccctgctggagatccagga
cagtatggttacaaaggaccaaaaggatcccaaggcaagcgtggaagcccaggacttcca
ggaattttcttgccaccagaagatgtgcagattccaaatggtgattttggtccagaagga
ttttctggtggtcctggtctggcaggatcagcaggacagcctggctcacctggatttcct
ggccccaaaggaaagattggatctccaggaaagcctggtcgcagtggtcctgctggatct
ccgggaattgttggagaccctgggtcaccaggattccaaggacttacaggttacaaaggt
tttcctggaaaacagggattaccaggtcgtcctgggctgcctgggcgcagcatagggatt
ggctacactttggtgaaacacagtcagtcctctcaagtgcccatgtgccctcagggaatg
gccaagctgtgggagggctacagcctactgtatgtagagggacaggagaaggcccataac
caggatttaggattggctggttcttgtctgcctcgtttcagcaccatccccttcctctac
tgcaccaccaccgagctgtgttactacgcgagccgcaacgacaagtcctactggctgtcc
acaacggcccccattcccatgatgccagtggcgaagcagcagatcactgagtacataagc
cgctgttcagtgtgtgaagccccctctcaggcagtggccgtccacagccaggacaccagc
attcccccctgcccgagcgggtggaggagcctgtggatcggatactcattcctcatgcac
acggctgcaggggcagagggaggtggtcagtctctggtatctcctggctcctgcttggag
gatttccgtgctacacccttcattgaatgcaacggagcccgtggcacctgcttcttcttc
aacaacaagcacagcttctggctgaccacggtggaccgagacaggcagtttgtgcagggt
ccagagtcagagacactgaagggagatcagtaccgcacccgcatcagccgctgccaggtc
tgcatgaagattctgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (2)   
   Pfam (2)   
All databases (72)   

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