KEGG   Alteromonas mediterranea 615: I633_13345
Entry
I633_13345        CDS       T02719                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
amh  Alteromonas mediterranea 615
Brite
KEGG Orthology (KO) [BR:amh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:amh03016]
    I633_13345
Enzymes [BR:amh01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     I633_13345
Transfer RNA biogenesis [BR:amh03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    I633_13345
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C
Other DBs
NCBI-ProteinID: AGP78519
UniProt: S5AGS3
Position
complement(2707999..2709156)
AA seq 385 aa
MQYQLITTFEHLEKVCEAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI
DNMQPFVALLENTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSLGYAK
LVELLCEISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGKVHWIY
EEVALLVEKKRAQMPEDFAYLSIKNSWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFK
EGHLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEARARYAQTPEKLRLPIVQ
RLIDIAKYKKYLAELKTISEQIAKDNGVTTDVIASKKQLNQLLKWYWFPVDETRVQGLKP
DLLSTWRAPLFRPHVARLLGDEPTQ
NT seq 1158 nt   +upstreamnt  +downstreamnt
atgcaatatcaattaattacaacatttgaacatctagaaaaagtgtgcgaagccgcacaa
cgtcaagaggcagttgcccttgatactgaatttgtgaggactaaaacccttacgccccat
cttggccttattcagctatacgatggacaccagctagtacttatagaccccctcgctatc
gataacatgcagccatttgttgcgttgttggaaaataccgaagtcgttaaagtattgcat
tcgtgttctgaagatcttgaggcttttcttaccgcctttgatacggtgccaacgcctgtg
ttcgatacgcaaatagccggtagtatcttggatatgggcccctctctgggctatgccaag
ttagtggagctgctttgcgagatcagcttagacaaaggcgagtcgcgaacggattggcta
gcacggccgctccgggaagctcaactgagctatgcggcgaacgacgttctttacctttta
ccctgttatcagcagctggcgtctaacgttcaggcgctaggaaaagtgcactggatatat
gaagaagtggcgcttttggttgagaaaaagcgtgcgcaaatgccagaagattttgcttac
ttaagcattaagaatagctggcgtttaaacagtgaacagctcaccgtattgcaagcgctg
gcggcatggcgattaaacacggcgagaaagaaagacctagcgctgaactttgtattcaaa
gaaggacatttatttgaggctgcgcagcgactgatagacgacaagtctggcttatcacgg
ataaatggcgtaaatcatcagtcggttaggcgttatggcgacactatcgtaacgctgatt
gaagaggcaagagcaagatatgcgcagacgccggaaaaacttagactgccaatcgtacag
cggcttatcgatatagcgaaatataaaaagtaccttgctgaacttaaaaccataagcgaa
caaattgccaaagataacggcgtaaccacagatgttattgcgtctaaaaagcaacttaat
cagctgttgaagtggtattggttccctgtagatgagacgcgggtacagggcttgaaaccc
gatttactctccacgtggagagcgcctttgtttcgcccacatgtagcacgtttacttggc
gacgaaccgacacaataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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