KEGG   Actinosynnema mirum: Amir_6038
Entry
Amir_6038         CDS       T00957                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ami  Actinosynnema mirum
Pathway
ami03030  DNA replication
ami03410  Base excision repair
ami03420  Nucleotide excision repair
ami03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ami00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Amir_6038
   03410 Base excision repair
    Amir_6038
   03420 Nucleotide excision repair
    Amir_6038
   03430 Mismatch repair
    Amir_6038
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ami03032]
    Amir_6038
   03400 DNA repair and recombination proteins [BR:ami03400]
    Amir_6038
Enzymes [BR:ami01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Amir_6038
DNA replication proteins [BR:ami03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Amir_6038
DNA repair and recombination proteins [BR:ami03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Amir_6038
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Amir_6038
   MMR (mismatch excision repair)
    DNA ligase
     Amir_6038
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Amir_6038
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT zf-TFIIB zf-IS66
Other DBs
NCBI-ProteinID: ACU39845
UniProt: C6WG81
Position
complement(7089303..7091753)
AA seq 816 aa
MTSDDHSSPDPAADRGDDLATTPGAPAADAPEGVRAQGLEDVPADARDRHRALAEEVRGH
QFRYYVLDAPTISDGEFDALLRELQSLEDAHPGLATPDSPTQQVGGTFSTEFTAVDHLER
MLSLDNAFDEDGLRAWFERVGKEVGDAARYLCELKVDGLAINLRYERGRLVRALTRGDGR
TGEDVTLNLRTLRDVPEVLTGTDEWPVPELVEVRGEVYFAVEDFLELNAKLVEAGLPPFA
NPRNTAAGSLRQKDPKVTASRRLRMVCHGIGKRAGFELERQSDAYAALRAWGLPTSEHTA
VVATFDEVWARVAHWGEHRHDAAHEIDGLVVKVDEVPLQRRLGSTSRAPRWAIAFKYPPE
EATTTLLDIGVQVGRTGRVTPFAIMEPVKVAGSTVARATLHNASEVKRKGVLIGDRIVIR
KAGDVIPEVLGPVVDVRPADAREFVMPASCPECGHALRPMKEGDVDIRCPNAEGCPAQLR
ERLAYLASRSALDVEVLGYEGAAALASSEVYGNEADLFDLTAEDLLRVDLFRNQDGALVT
NGAKLLENLEAAKSQPLWRVLVALSIRHVGPTAARALAVEFGGVQAILDAEEADLAAAGG
VGPTIAAAVREWALTPWRQEVVRRWAAAGVRMVDERDTTIRRDLEGLSIVVTGTLADFSR
DEAKDSILVRGGKAVGSVSKKTAFVIVGDNPGSKADKAAQLKVPVLDEAGFRVLLERGPE
AAAAVAVVAVVAVAGSSEDGAGAGAGAGSGDGAGSSDGTGSGAGAGSGEAIGGDAGESAS
TGGGVSGESAPTAGGAGAESVPTSGAVEPGEGPAAG
NT seq 2451 nt   +upstreamnt  +downstreamnt
gtgaccagcgacgaccactcctcccccgaccccgccgcggaccggggcgacgacctcgcc
accacccccggcgcgcccgcggccgacgcgcccgagggcgtgcgcgcccagggcctggag
gacgtgcccgccgacgcccgcgaccggcaccgcgcgctcgccgaggaggtgcgcggccac
cagttccgctactacgtgctcgacgcgcccacgatctccgacggcgagttcgacgccctg
ctgcgcgagctccagtccctggaggacgcccaccccggcctggccaccccggactcgccc
acccagcaggtcggcggcacgttctccaccgagttcaccgccgtcgaccacctggagcgg
atgctcagcctggacaacgcgttcgacgaggacgggctgcgggcgtggttcgagcgggtc
ggcaaggaggtcggcgacgcggcgcggtacctgtgcgagctcaaggtcgacgggctcgcc
atcaacctgcggtacgagcgcggcaggctcgtccgggccctgaccaggggcgacggccgc
accggtgaggacgtgacgctcaacctgcgcaccctgcgcgacgtccccgaggtgctcacc
gggaccgacgagtggccggtccccgagctggtcgaggtgcgcggcgaggtgtacttcgcc
gtcgaggacttcctggagctgaacgcgaagctggtggaggcgggcctgccgccgttcgcg
aacccgcgcaacaccgccgcgggctcgctgcggcagaaggacccgaaggtcaccgcgtcc
cgcaggctgcgcatggtgtgccacggcatcggcaagcgcgccgggttcgagctggagcgc
cagtccgacgcgtacgcggcgctgcgcgcctgggggctgcccacgtccgagcacaccgcc
gtcgtggcgacgttcgacgaggtgtgggcgcgcgtcgcgcactggggcgagcaccggcac
gacgccgcgcacgagatcgacgggctcgtggtgaaggtggacgaggtcccgctgcagcgc
aggctcggcagcacctcgcgcgcgccccgctgggccatcgcgttcaagtacccgccggag
gaggccaccacgacgctgctcgacatcggcgtccaggtcggccgcaccgggcgggtcacc
ccgttcgcgatcatggaaccggtgaaggtcgcgggctccacggtggcccgcgcgacgctg
cacaacgcgtccgaggtcaagcgcaagggcgtgctcatcggcgaccggatcgtcatccgc
aaggcgggcgacgtgatccccgaggtgctcggcccggtcgtggacgtgcgcccggcggac
gccagggagttcgtgatgcccgcgtcctgcccggagtgcgggcacgcgctgcgccccatg
aaggagggggacgtggacatccgctgccccaacgccgaggggtgccccgcgcagctgcgg
gagcggttggcctacctggcctcgcggtccgcgctggacgtcgaggtgctcgggtacgag
ggcgcggcggcgctggcgtcgtccgaggtgtacgggaacgaggcggacctgttcgacctc
accgccgaggacctgctgcgcgtggacctgttccgcaaccaggacggcgcgctggtgacg
aacggcgcgaagctgctggagaacctggaggccgccaagtcgcagccgctgtggcgggtc
ttggtggccctgtcgattcgccacgtggggccgacggcggcgcgcgcgctggcggtggag
ttcggcggcgtgcaggccatcctggacgccgaggaggccgacctggcggcggcgggcggg
gtcgggccgacgatcgcggcggcggtgcgggagtgggcgctgaccccgtggcggcaggag
gtcgtgcgccgctgggccgcggcgggggtgcgcatggtggacgagcgcgacaccacgatc
cggcgcgacctggaggggttgtcgatcgtggtcaccgggacgctggcggacttctcccgc
gacgaggccaaggactcgatcctggtgcggggcggcaaggcggtcgggtcggtgtcgaag
aagacggcgttcgtgatcgtgggggacaaccccggcagcaaggcggacaaggccgcgcag
ctgaaggtgccggtgctggacgaggccgggttccgggtgctgctggagcgggggccggag
gccgccgcggcggtcgcggtggtcgcggtggtcgcggtggcggggagttcggaggacggg
gctggagcgggggccggggcaggctcgggtgacggggctggttcgagtgacgggactggt
tccggggccggggccggctcgggcgaggcgatcggcggggatgcgggggagagcgcttcc
acgggcggcggggtgagcggggagagcgctcccacggctggtggcgcgggcgcggagagc
gttcccacgagcggcgcggtcgagccgggggaggggcctgcggcggggtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (38)   

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