KEGG   Advenella mimigardefordensis: MIM_c14740
Entry
MIM_c14740        CDS       T03016                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
amim  Advenella mimigardefordensis
Pathway
amim03030  DNA replication
amim03410  Base excision repair
amim03420  Nucleotide excision repair
amim03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:amim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MIM_c14740 (polA)
   03410 Base excision repair
    MIM_c14740 (polA)
   03420 Nucleotide excision repair
    MIM_c14740 (polA)
   03440 Homologous recombination
    MIM_c14740 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amim03032]
    MIM_c14740 (polA)
   03400 DNA repair and recombination proteins [BR:amim03400]
    MIM_c14740 (polA)
Enzymes [BR:amim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     MIM_c14740 (polA)
DNA replication proteins [BR:amim03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MIM_c14740 (polA)
DNA repair and recombination proteins [BR:amim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     MIM_c14740 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MIM_c14740 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: AHG63564
UniProt: W0P9M8
Position
1681114..1683831
AA seq 905 aa
MKKTLLLVDGSSYLYRAFYAMPDLRNARGEPTGALYGVINMMRKCIDDYKADYAACIFDA
KGKTFRDDLYPEYKGDRPSMPDDLAVQTGPIHEAIRAMGWPVIAAPGVEADDVIATLADM
AARSDIHTIISTGDKDLAQLVNSHISLVNTMTGENLDEAGVLAKFGVRPERIVDYLMLIG
DNVDNVPGVTKVGPKTAVKWLNEYDSIDNLVANADQIKGVAGQNLRDAIAQFELTRNLIT
VRRDCELTEFMQSVEDLLPRAPDVATLTNIYDRYGFRTWLRELTGDAERVPEQDARVAQN
LPDAPAQINYQTVDTAEKFDACLAAIKQAERVAIDTETTSLNPMQASLVGISLAIEPGAA
WYIPLGHRGTGAGTQLDKAHTLAALRDWLQDERAAKILHNAKYDSHVFLNEGITLSGIKD
DTMLMAYVLESHRSVGMQELAQRYLGRTGTTYEEICGKGAKQIGFDEVDIETATHYAAED
ADFTLQLFQALAPLVQEQEGLERIYRLEVQVSRVLTLIERNGVRIDETMLRQQSAQIGAK
LVELENKAYELAGQPFNLNSTKQLGEILFGKMNLPVLRKTPKGAPSTDEDVLSRLAADYP
LPRTLLDYRSLAKLKSTYTDKLPKMINASTGRVHTDYAQAAVITGRLASSDPNLQNIPVR
TEEGRRIRMAFIPSDGGVIVSADYSQIELRVMAHLSGDANLQKSFQEGEDIHRATAGEVF
GVAPEAVNAEQRRAAKAINFGLIYGMSAFGLAANLGITRDAAQTYIDRYFARYPGVADYM
SRIKKEAAAKGYVETVFGRRLWLPEINGKGPRRAGAERAAINAPMQGTSADLIKMAMVAV
QAWLEKEKLSSRLVMQVHDELVLDVPGSEQALVTQALPGLMCDVASLAVPLVAETGVGHN
WEEAH
NT seq 2718 nt   +upstreamnt  +downstreamnt
atgaaaaaaaccttgttacttgttgacggatcaagctatttgtaccgcgccttctatgcg
atgcccgatctgcgtaatgcgcgtggagagcccactggcgccctgtatggcgtgataaac
atgatgcgaaaatgcattgatgattataaggccgattatgccgcatgtatttttgatgca
aaggggaaaacattcagggatgatttgtatcccgaatacaagggggacagaccgtccatg
cccgatgatcttgctgtgcaaacgggtcctattcatgaggccatacgcgcaatgggctgg
cccgttattgccgcgccgggtgtagaagcggatgacgtgattgcaacgctggccgatatg
gctgcccgctccgatattcacactattatatcaactggcgacaaggatttggcgcaactg
gtcaattcccatatttcactggtcaacaccatgaccggtgaaaacctggacgaggctggt
gtgctggccaagttcggtgtccggcccgaacgtattgtggactacctgatgctgatcggc
gataacgtggataatgtgccgggtgtaaccaaggtgggccccaagacggccgtcaagtgg
ctcaatgaatatgacagtatcgataatctggttgccaatgcagatcagatcaaaggtgtt
gccggtcaaaacctgcgtgacgcaattgcgcagtttgaactcacccggaatctcattacc
gtcaggcgcgactgcgaactgaccgagttcatgcagagcgtggaagacctgctgcccagg
gcccccgatgttgcgaccctgacgaatatttatgaccgttacggctttcgcacctggcta
cgggagttgacgggggacgcagagcgggtgccggagcaggatgcgcgggtggcgcagaat
ctgcccgatgcgcctgcgcagatcaattatcagaccgtagataccgctgaaaaattcgat
gcgtgtctggccgcaatcaaacaggcggaacgggtagcgattgatacggaaaccacttcc
ctgaaccccatgcaggccagcctggtgggtatttcacttgctattgagccgggggcggcc
tggtatattccgctggggcatcgcggaaccggagccggcacgcaactggacaaggcccac
accctggcggcgctgcgcgactggctgcaggacgagcgcgcggccaagattctgcataac
gccaaatatgacagccatgtgtttctgaatgaaggtattaccctgtccggtattaaagac
gataccatgctcatggcgtatgtgctggagtcgcatcgcagcgtgggtatgcaggaactg
gcgcagcgctatctgggacgaaccggcaccacctacgaggaaatttgcggcaagggcgcc
aagcagatcggctttgatgaagtggatattgaaacggccacgcattatgccgccgaagat
gcggacttcacgttgcagctttttcaggcgcttgcccctctggttcaggagcaggaaggg
ctggagcgcatttatcggctggaagtgcaggtatcacgggtcctcacattgatcgaacgc
aatggggtgcgcattgatgaaaccatgctgcgccagcaaagtgcgcagatcggcgccaaa
cttgtggagctggaaaataaggcttatgagctggccggacagcccttcaatctgaattcc
accaaacagctgggtgaaattctgtttggcaaaatgaatctgcctgtgttgcgcaagacg
cccaagggcgcgccgtctaccgacgaagatgtgttgtccaggctggcggcagactatccc
ttgccacgtacgctgctggactatcgcagtctggccaaactcaagtctacctataccgat
aagctgccgaaaatgattaatgcgtcgaccgggcgggtgcatactgattatgcgcaggcg
gcagtcattaccggcaggctggcttcatctgatcccaatttgcagaatatcccggttcgc
acagaggaggggcgtcgcatccgtatggcgtttattccttcggatgggggcgtgattgtt
tctgccgattattcccagatcgaattgcgggtcatggcgcatttgtcgggcgatgccaat
ctgcagaaatcgtttcaggaaggcgaggatattcaccgcgccaccgcgggcgaagtattt
ggtgtggcgccagaggccgtcaatgctgagcagcgccgtgccgccaaggccatcaatttc
gggctgatctacggtatgagcgcattcgggctggcggccaatctgggtattacgcgcgat
gccgcgcaaacctatattgatcgctatttcgcgcggtatccgggagtggccgattatatg
tcgcgcatcaaaaaggaagccgctgccaaaggttatgtggaaacggtttttggtcgtcgt
ctgtggctacccgagatcaatggcaaagggccacggcgtgccggtgccgagcgggccgcc
attaatgcgcctatgcagggtacctcggccgatctgatcaaaatggccatggtcgccgta
caagcctggctggaaaaggaaaaactgtcgtcgcgcctggtcatgcaggtgcacgatgaa
ctggtgctggatgtaccgggcagcgagcaggcgctggtcacccaggcattgccggggctg
atgtgcgacgtagccagcctggcagtgccactggtggccgaaaccggggtcggccataac
tgggaagaggcgcattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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