KEGG   Alligator mississippiensis (American alligator): 102564274
Entry
102564274         CDS       T03087                                 
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha
  KO
K04834  voltage-gated sodium channel type II alpha
Organism
amj  Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:amj00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:amj04040]
    102564274 (SCN2A)
Ion channels [BR:amj04040]
 Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   102564274 (SCN2A)
SSDB
Motif
Pfam: Ion_trans Na_trans_assoc Na_trans_cytopl PKD_channel ATP-synt_B Neur_chan_memb Pol_alpha_B_N FUT8_N_cat
Other DBs
NCBI-GeneID: 102564274
NCBI-ProteinID: XP_019335738
Position
Un
AA seq 1628 aa
MAQSVLVPPGPDSFHYFTRESLAAIEQRIAEEKAKKSKEERKDDDDENGPKPNSDLEAGK
TLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSAVYMLTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LENFTFLRDPWNWLDFTVITFAYLTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCLQWPPDNSTFEINVISYFNSTI
GENGSFVNATVSTFNWDEYIEDTSHFYFLEGQNDALLCGNGSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEEAQAAAVAAAADSREFSGVGGI
AGFSESSSEASKLSSKSAKERRNRRKKKKQKEQSEGEGKDEEEFHKSESEDSIRRKGFRF
SIEGNRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFSFRGRAKDVGSENDFADDEHS
TFEDNESRRDSLFVPHRHGERRNSNISQASRSSRTIPALPANGKMHSTVDCNGVVSLVGG
PPALTSPTGQLLPEGTSTETELRKRRSSSYHVPMDYLTDPSARQRAMSIASMLTNTMEEL
EESRQKCPPCWYKFANTCLIWDCCAPWLKVKHIVNLIVMDPFVDLAITICIVLNTLFMAM
EHYPMTEQFSSVLSVGNLVFTGIFTAEMFLKIVAMDPYYYFQEGWNIFDGFIVSLSLMEL
GLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTM
CLTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVSRIQKGIDFVK
RKAREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTIVEIGKNLNYLKEGNGTTSGI
GSSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDLEESKEKLNAS
SSSEGSTVDIGLPPEGEQPEVEPEDSLEPEACFTEGCIRRFKCCQVSVEDGKGKLWWNLR
KTCYRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEML
LKWVAYGFQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALS
RFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTNDERFDVS
QINNYSQCEDLIANNKTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVL
DQPMYEENLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQAFDISIMILICLNMVTMMVETDDQSKE
METILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGKNNSLSRRDR
WNLGAINI
NT seq 4887 nt   +upstreamnt  +downstreamnt
atggcacaatcagtgctggtaccaccaggacctgacagcttccattatttcacaagagag
tcacttgcagctattgaacaacgtattgcagaagaaaaagctaagaagtccaaagaagaa
cgcaaagatgatgatgatgaaaatggaccaaagccaaatagtgacttggaggcagggaag
acactgccatttatttatggtgacatacctccagaaatggtgtccgagcccttggaggac
ctggacccatactacatcaataaaaaaacttttatagtattgaataaagggaaggcaatc
ttccgattcagtgccacctctgccgtgtacatgttaactcctttcaatccccttagaaaa
atagctattaagattttggtacattcattattcagcatgcttattatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccggattggacaaagaatgtagaatac
acgttcactggaatttatacctttgaatcgcttataaaaattcttgcaaggggattctgt
ttagaaaattttacttttctccgtgacccatggaattggctggatttcactgttattaca
tttgcatatctaacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagcattgaaaacaatatcagtcattccaggcttgaagactattgtgggagcc
ctaattcagtctgtgaagaagctctcggatgtaatgatcctgactgtgttttgtctgagt
gtgtttgcactaatagggctacagctattcatgggcaacttgaggcataaatgcttgcag
tggcctccagacaactcaacttttgaaataaatgttatttcctactttaacagcacaata
ggtgaaaacggttcatttgttaatgcaacagtgagcacgtttaactgggatgagtacatt
gaagatacaagtcatttttactttttggaagggcaaaatgatgctctgctgtgcggcaat
ggctcagatgcaggtcaatgtccagaaggatatatatgtgtgaaagctggtagaaacccc
aattatggctatacaagcttcgatacattcagctgggcattcttatcactgtttcgactg
atgactcaggacttttgggagaatctgtatcagctgacattacgagctgctggcaaaaca
tacatgatattttttgtgctggtaattttcttgggctctttctacctgattaacctaatc
ctggctgttgttgccatggcctatgaagaacagaaccaagcaaccatggaagaagcagaa
cagaaagaggcagaatttcaacagatgcttgaacagctgaaaaagcaacaggaagaagct
caggcagcagcagtggcggcagcagccgattcaagagaattcagtggagtaggtggcata
gctggattttctgaaagttcttctgaagcatcaaagttgagttcaaagagtgctaaagag
aggaggaacagaagaaagaaaaaaaagcagaaggagcaatctgaaggagagggaaaggat
gaggaagaatttcacaaatctgaatcagaagacagtatcagaaggaaaggcttccgattt
tctattgaaggcaacagattgacatatgaaaagaggttctcttctcctcaccagtctttg
ctgagcattcgtggctcccttttttccccaagacgtaacagcagagcaagtcttttcagc
ttcagaggtcgagcaaaagatgtaggatcagaaaatgactttgctgatgatgagcacagc
acttttgaagacaatgagagcagaagggattctctctttgttccacacagacatggtgaa
cgacgcaacagtaatattagccaggccagtaggtcatccaggaccataccagcacttcca
gcaaatgggaagatgcatagtactgtggattgtaatggtgtagtttctttagttggtgga
cctcctgctctgacatcacctactggacaactactgccagagggcacctctacagaaaca
gaattaagaaagagacgttcaagttcttaccatgttcctatggactacttaacagatccc
agtgcaaggcaaagagcaatgagtatagccagcatgctcacaaatacaatggaagaactt
gaagaatccagacagaaatgtccaccatgctggtataaatttgctaatacgtgcttgatc
tgggactgctgcgctccatggttaaaagtaaaacatattgtaaatctgattgtgatggat
ccatttgttgatcttgctataactatatgcattgttttaaatactctgtttatggctatg
gagcattatccaatgacagagcagttcagcagtgtgctttcagtaggaaacctggtattt
actgggatcttcacagcagaaatgtttcttaagatagttgccatggatccttactattat
ttccaagaaggatggaatatttttgatggttttattgtgagccttagtttgatggaactt
ggtcttgcaaatgtggaaggcttatctgttctcagatctttcagactgcttcgagttttc
aagttagcaaaatcttggccaacgctaaatatgttgataaagattattggtaactcagtg
ggggctttaggaaatttaaccttggtgctggccatcattgtcttcatttttgcggtggtt
ggcatgcagctctttggtaaaagctacaaggaatgtgtctgcaagatctctaatgactgt
gaacttccacgctggcacatgcatgactttttccactctttcttgattgtattccgagtg
ctgtgtggagaatggatagagactatgtgggactgtatggaggttgcaggtcaaaccatg
tgccttactgtcttcatgatggtcatggtgattggaaacctagtggtactcaacctcttt
ctggccttgcttctgagctcatttagttcagacaaccttgctgctacagatgatgataat
gaaatgaacaatttgcagattgctgtgtcaaggattcagaaaggaattgattttgtgaaa
agaaaagcacgtgaattcatccaaaaagcttttgtaagaaagcaaaaagcgttagatgaa
atcaaacctcttgaagatctcaacaacaaaaaagacagttgcatttccaaccataccata
gtagaaataggtaaaaaccttaactaccttaaagaagggaatggaactaccagcggcata
ggcagcagtgtggaaaaatatgtcgtcgatgaaagtgattacatgtcattcataaacaat
ccaagcctcactgtgacagtaccaattgctgttggggaatctgattttgaaaatttaaat
acagaggaatttagcagtgagtcagatctggaggaaagcaaagagaagctaaatgcatcc
agctcatctgaagggagcacagttgatattggacttcctccagaaggagaacaaccagaa
gtagaacctgaagattctcttgaaccagaggcctgttttacagaaggctgcatacggagg
ttcaagtgctgtcaagtcagcgtcgaagatgggaaaggaaaactctggtggaaccttagg
aaaacctgctacagaatagttgaacacaactggtttgagactttcattgtcttcatgatt
cttctcagcagtggtgctctggctttcgaggacatatatattgaacagcgcaagactatc
aagaccatgctagaatatgctgacaaggtcttcacttacatcttcattctggaaatgctt
ctgaaatgggtggcctatggttttcaaacatatttcactaatgcctggtgctggctggat
ttcttgattgtcgatgtctctttggttagcttaacagctaatgccttgggctactcagaa
cttggtgcgattaaatcccttaggacactaagagctttgagacctctaagagccttgtca
cgatttgaagggatgagggtggttgtgaatgccctcttaggagcaattccatccattatg
aatgtgcttcttgtttgtctcattttttggctaatcttcagcatcatgggagtaaatcta
tttgctggcaaattctactactgtgttaacaccacaaatgatgaaaggtttgatgtcagc
caaatcaataattacagtcaatgtgaggaccttatagcaaacaataaaactgcccgatgg
aaaaatgtgaaagtgaactttgataatgtaggacttggttatctttctcttcttcaagtt
gccacatttaaaggatggatggatatcatgtatgcagcagtggattctcgcaatgtattg
gatcagcctatgtatgaggaaaacctgtatatgtatctttactttgtcatctttataatc
tttggatcattctttaccttgaacctgttcattggtgtcattattgataacttcaaccag
cagaaaaagaagtttggagggcaagacatcttcatgacagaagaacagaagaaatattac
aatgcaatgaaaaagttgggttcaaagaaaccacaaaaacctatacctagaccagcgaac
aagtttcaaggcatggtcttcgactttgttacaaaacaagcatttgatatcagtattatg
attcttatctgtcttaacatggtcaccatgatggtagaaacagatgatcagagtaaagaa
atggaaactattttatctcggattaacctagtgtttattgtccttttcaccggagaatgt
gtcctgaaactgatctcactccgccattactacttcaccataggctggaacatttttgat
tttgtggttgttattctctccatagtaggtaagaacaattcactttcaagaagggaccgt
tggaatcttggggccattaacatttga

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