KEGG   Alligator mississippiensis (American alligator): 102564411
Entry
102564411         CDS       T03087                                 
Symbol
RB1
Name
(RefSeq) RB transcriptional corepressor 1
  KO
K06618  retinoblastoma-associated protein
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj04110  Cell cycle
amj04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:amj00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    102564411 (RB1)
   04218 Cellular senescence
    102564411 (RB1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:amj01009]
    102564411 (RB1)
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:amj03000]
    102564411 (RB1)
Protein phosphatases and associated proteins [BR:amj01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102564411 (RB1)
Transcription factors [BR:amj03000]
 Eukaryotic type
  Other transcription factors
   Pocket domain Rb
    102564411 (RB1)
SSDB
Motif
Pfam: Rb_C RB_A RB_B DUF3452 DUF5548
Other DBs
NCBI-GeneID: 102564411
NCBI-ProteinID: XP_019355972
Position
Un
AA seq 898 aa
MGGSRNFRVEFGEADFVALCDILKVSDVIRTSAWKTYEKVSSVVGSLEAYIKKKKEIWGI
CIFIASVDLDEITFTFTELLKSIGLSACTFFQLLKQMDRNMDTISTNVDSTVSRLQKKYE
VLLALYRKFERICGLIYVAQPNNQISDELNSMLVQKISWITFLLAKGKVLQMEDDLVISF
QLLLCVLDYFIKLAPPALLKEPYKSAVNTVSINGSTRTPRRGQNRSTRTSKQTDTDTKVI
EVLCKEHDCNLDEVKNVYFTSFIPFLNSVGIVASNGLPEVETLSRQYEEVYLKNKDIDAR
LFLDHDETLQPDHIDGCLQLERTPRKSNPDEEFNLILPQTPVRAAMNTIQQLMMILNSAT
DKPSETLISYFNNCTVNPEEGIRKRVEDLGHIFKEQFAKAVGQGCAEIGSQRYKLGVRLY
YRVMESMLKSEEERLSVHNFSKLLNNNDFHTSLLACAVEVVMATYGRNASQSDGTSAETD
LSFPWILNVFDLKAFDFYKVIESFIKAEPSLTREMIKHLERCEHRIMESLAWQSDSPLFD
LIKQSKEREGQVDQPEPTCTLNLPLQHNHTAADLYLSPVRSPKKKGSTVHLNCTPPTDAQ
LAVTPQTQKPQKSTSLSLFYKKVYRLAYLRLNTLCFRLLSEHPELEHLIWTLFQHTLQNE
YELMRDRHLDQIMMCSMYGICKVKNIDLRFKIIVSAYKELTNTSQETFKRVLIREGQYDS
IIVFYNLVFMQKLKTNILQYASNRPPTLSPIPHIPRSPYKFSNSPLRVPAGNNIYISPLK
SPYKVSEGLLSPTKMTPKSRILVSIGETFGTSEKFQKINQMVCSSDRQLKRSAEVSSAPK
PLKRLRFDIEGQDEADGSKHLPGESKFQQKLAEMTSTRTRMQKQKLNDGTDTSASEEK
NT seq 2697 nt   +upstreamnt  +downstreamnt
atgggtggtagccggaacttcagggttgagtttggagaagcagattttgttgcactttgt
gacattttaaaagtttcggatgtcataagaacaagtgcgtggaagacatatgaaaaagtg
tcatctgtggttggatctctagaggcctacatcaaaaagaagaaggagatatggggaatc
tgtatctttattgcatcagttgacctggatgagataacattcacttttacagagcttctg
aaaagtataggtctaagtgcatgtacattttttcagttgttgaagcaaatggataggaac
atggataccataagcactaatgttgatagtactgtatcacgactacagaagaaatatgaa
gtattacttgcgctatatcgcaagtttgaaaggatttgtggacttatttatgtggcacag
cctaataatcaaatttctgatgaactcaattccatgttagttcaaaagatttcttggatc
acttttttgttggctaaaggaaaagtgttacagatggaagatgacctggtgatctctttc
cagttattgctgtgtgttctcgattattttatcaaacttgcaccaccagcattgctcaag
gaaccatacaaatctgctgtgaatacagtatctattaatggctcaactcgaactccaagg
cgaggtcagaataggagcacacgtacatcaaagcaaactgatacagatacaaaagttatt
gaagtcctttgtaaggaacacgattgtaatttagatgaggtcaaaaatgtatatttcaca
agcttcattccattcttgaattctgttggtattgtagcttcaaatggactcccagaggtt
gagactctctcaaggcaatatgaagaggtttacctgaaaaacaaagacatagatgcaaga
ttatttctggaccatgatgaaactctacagcctgatcacatagatggttgcttacagttg
gagagaacaccaaggaaaagtaacccagatgaagagttcaatctcatacttccacagact
ccagttcgtgctgcaatgaacactatacagcagttaatgatgattttaaattcagcaact
gataaaccgtcagagactctcatttcatatttcaataactgtacagtgaaccctgaagaa
ggtataaggaaaagggtagaagatcttgggcacatcttcaaggagcaatttgctaaagct
gttggacagggttgtgctgaaatcggctcacagagatacaagcttggtgtacggctatat
tatagagtaatggaatccatgttaaaatcagaagaagaacgtctgtcagtgcacaatttt
agcaaacttttgaacaataatgacttccacacatctcttctggcttgtgctgttgaagtt
gtcatggctacatatggcaggaatgcttcacaaagcgatggtaccagtgctgaaacagat
ctctctttcccatggatactcaatgtatttgatttaaaagccttcgacttctataaggtg
attgaaagctttattaaagcagaaccaagcttaacaagagagatgataaaacatctagaa
cgctgtgaacatcgcattatggaatctcttgcatggcaatcggattcacctttatttgat
cttatcaagcagtcaaaggaaagagaaggtcaggttgatcagcctgaacccacttgcact
ctaaacctgcctctccagcataatcacactgctgcagacctgtatctttctcctgtgaga
tcacctaagaaaaaaggatctacagttcacttaaactgtactcctcctacagatgctcag
ttggctgtgaccccccagactcagaaaccacagaaatctacctccctctccctattttac
aaaaaagtatatcggctggcatatcttcgattgaataccctgtgctttcggcttctctct
gaacaccctgaactggaacacttgatctggaccctttttcagcacacgctgcaaaatgaa
tatgaacttatgagagacaggcacttagaccagatcatgatgtgttctatgtatggcata
tgcaaagtcaagaacatagatctcagatttaaaatcattgtttcagcatacaaggagctc
accaataccagtcaagagacttttaagcgtgttctgatcagggaaggacaatatgactcc
attatagtcttctacaatttagtgtttatgcagaaattgaaaacgaatatattgcaatat
gcctccaataggcctcctaccttatcccctatcccacatattcctcgaagcccttacaag
ttttctaattcccctctccgtgtccctgctggaaataacatctacatctcacccttgaag
agtccctacaaagtctctgaggggctgctgtcacccacaaaaatgacaccaaaatccaga
atcttggtgtcaattggtgaaacatttgggacttcagagaagtttcaaaaaataaaccag
atggtgtgtagcagtgaccgtcagctgaaacgcagtgcagaagtaagcagtgctcccaag
ccgctgaaaagactgcgctttgacatagagggacaagatgaagcagatggaagcaaacat
ctaccaggagagtccaaattccaacaaaagcttgcagaaatgacatctactcgaacgaga
atgcaaaagcaaaaactgaacgatggaaccgatacctcagccagtgaagaaaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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