KEGG   Alligator mississippiensis (American alligator): 102566632
Entry
102566632         CDS       T03087                                 
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102566632 (CNOT1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    102566632 (CNOT1)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102566632 (CNOT1)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     102566632 (CNOT1)
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT
Other DBs
NCBI-GeneID: 102566632
NCBI-ProteinID: XP_006271768
Position
Un
AA seq 2377 aa
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDNKGLQIVVFGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFITACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPGGL
TTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQTDLSQVWPEANQHFSKEIDD
EANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYP
DKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRFKNRLK
DYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQV
PAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLVATDQTE
RIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFH
SLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAK
NKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMAIMNVL
AELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQP
EELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPAIPLFQAH
PQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMR
NLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQENCELACCF
IQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDP
KQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQHLQSI
PHTLTMNPQTQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRE
CHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHL
AQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGNAPEGL
PQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSA
AAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHE
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq 7134 nt   +upstreamnt  +downstreamnt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgacacggt
cccgaggcagacaggcatttacttcgctgtctattctcacatgtggatttcagtggcgat
ggtaaaagcagtggtaaagatttccatcagactcagtttctgatccaagagtgtgcatcc
ctgatcacaaagccaaactttatctcgacactgtcctacgccattgacaatccattgcac
tatcaaaagagtctaaagccttcaccccatctatttgcccaactgagtaaagttatcaaa
ttaagtaaagttcaagaggtgatttttggtcttgctttactgaactctttcagctcagat
ctcagaggttttgcggctcagtttatcaaacagaaacttccagatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaagtc
ctgcaccttctcctctctcatctcctttttgggcagaagggagcctttggggtcggacag
gaacagattgacgctttccttaaaacattacgtagagattttccccaagagcgctgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagctctctggcagactttatgcaa
gaagtaggctatggcttttgtacaagtgttgaagaatgtcgcaatataatcatgcagttt
ggtgtgcgggaggtcactgcttctcaggttgccagagttttgggaatgatggcccgaact
cattcagggttgacagatggtattccattacaatctatctcggctcctggcagtgggatc
tggagtgatgggaaggacaaaagtgatggaacacaagctcacacctggaatgtggaggtt
ttaatagatgttcttaaagagttgaatcctagtttgaacttcaaggaagtaacctatgag
ttggaccacccagggtttcaaatccgtgacaacaagggtctgcagattgtggtgtttggc
atccagagagggctaggcatggaagtcttcccagttgatctcatatataggccttggaaa
catgcagagggccagctctccttcattcagcattctctcataaatccagagatcttctgc
tttgctgactacccctgtcatactgttgccacagacatccttaaagcgccaccagaggat
gacaatcgagaaattgccacctggaagagcctggatttgatcgaatccttgttgcgtttg
gcagaggtggggcagtatgagcaggtgaagcagctcttcagttttcctatcaagcactgc
ccagatatgttggtattggccttattacagatcaacacttcctggcataccttgcgccat
gagctcatctccacacttatgccaatttttcttggcaatcaccccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgccaacttatcatgcat
gcaatggcagagtggtacatgagaggggaacagtatgatcaggcaaaactgtcacgcatt
cttgacgtggcacaagacttgaaggccttgtcaatgctgctcaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaagcttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatcacagcctgtatgactttttta
aagaggcgatgcccatctatcctgggtggccttgccccagaaaaggaccagcccaaaagt
gctcagcttcccccagaaactctagcgactatgttggcttgcttacaagcttgtgccggg
agtgtttctcaggagctatcggagaccatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaagctagacaaccaccacctggagtcatgcccaagggacgtccacctagtgct
agcagtttggatgctatttctcctgtacagattgacccgcttgctgggatggcatctctt
agtttaggtggttcagcagctccacatacccagagtatgcaaggcttccctcctaacttg
ggctctgctttcagcacacctcagtcaccagcaaaagcatttcctcctctttccacccaa
aaccagaccacaggttttagtggcattggaggactctcttcacagcttccaggtggtctt
actacgggtagcctgactggtataggaactggggcccttggcctccctgcagtgaacaac
gatccattcgtgcaaaggaaactgagcacatctggactgaaccagcctacattccagcag
accgatttatctcaggtgtggccagaggcaaatcagcactttagcaaagaaatagatgat
gaggcaaatagctactttcagcgcatttataaccatccaccacacccaaccatgtctgta
gatgaggtattagaaatgctacagagatttaaagactccaacattaaacgggaacgagaa
gtgtttaactgtatgctgaggaacttgtttgaggagtaccgatttttcccccagtaccca
gataaagagctgcacataacagcctgcctctttggtgggataatagagaaaggactggtt
acttatatggcattgggccttgccctgcgctatgttcttgaagccttacgaaagcctttt
gcatccaaaatgtactattttggtattgctgcactagatagatttaaaaatagattgaag
gactatccccagtattgtcagcacttggcttctattagtcactttatacagttccctcat
cacctacaggagtacattgaatatggacagcaatccagagatcctcctgtgaagatgcag
ggttcaatcaccacccctggaagtattgcacttgcccaggcccaagcccaggcccaggtt
ccagcaaaagctcctcttgctggtcaagtcagcactatagtaaccacctcaaccaccacc
actgttgcaaaaaccattacaatcactcgaccaaccggagtcagcttcaaaaaagatgtt
ccaccttccattaatactaccaatattgataccttgctagttgcaacagatcaaacagag
agaattgtggaacccccagaaaatgtccaggaaaagattgcattcatcttcaacaatcta
tctcaatcaaacatgacacagaaggttgaggagctgaaggaaacggtgaaagaagagttc
atgccttgggtttcacagtaccttgtgatgaaaagagtcagtatcgagccaaactttcac
agcttatattcaaacttccttgatactcttaagaatccagaatttaataagatggttctg
aatgaaacctatagaaatatcaaggtgctgctgacatctgataaggctgcagccaacttc
tcagaccgttccctgttaaagaaccttggccactggttgggaatgatcacattggctaaa
aataaacccatcttgcacacagatttggatgtgaaatccttacttctggaagcctatgtc
aagggacagcaggagttgctttatgtagtgccatttgttgccaaagtcttagaatccagt
gtcaggagtgtggttttcagacctccaaacccttggacgatggcaatcatgaatgtatta
gctgagctgcatcaagagcatgacttaaaactgaacctgaagtttgagattgaggtgttg
tgcaagaaccttgcattagacatcaatgagctgaaacctggaaacctcctgaaagataag
gatcgattgaaaaatctggatgaacagttgtctgctccaaagaaagatgtaaagcagcca
gaggaactaccacctatcacaacaaccactgcttcaacaactccagctaccagcaccact
tgtacagccactgttcctccacaacctcagtacagctaccatgatatcaatgtctactca
ctgggagggttggctccacatattactctaaatccagctattccactatttcaggctcac
ccgcagttaaagcagtgtgtgcgtcaggctatagagcgagccgtgcaggaacttgtccac
ccagttgtagatcggtccattaagattgccatgactacttgtgaacagatagtcaggaaa
gattttgcactggattcagaggagtcacgcatgcgtgtagcagcacaccacatgatgcgg
aacctgactgctggaatggccatgattacctgcagggaacctttgctgatgagcatagct
accaacttgaagaacagttttgctactgccctgagggcagcatccccacaacagagggag
atgatggagcaggcagctgcacagttagctcaggagaactgtgagttagcatgctgcttc
attcagaagacagctgtggaaaaggcaggccctgaaatggacaagaggctggcaactgaa
tttgagctcagaaagcatgccagacaagagggtcggcgttactgtgatccagttgtgtta
acttaccaggctgaacggatgccagagcagataagactgaaggttggtggtgtggaccca
aaacaactagctgtttatgaagagtttgcccgcaatgtccctggcttcttacctaccaat
gacttaacacagcccacaggattcttggctcagcctatgaagcaggcctgggctactgat
gatgtagcacagatctacgataaatgtatgacagaactggaacagcatctgcaatctatt
ccacataccctgaccatgaacccacaaactcaagccttacgcagcctcttggaggctgta
gtggtggctcgtaactcccgtgatgctattgctgctcttggactgctacagaaggctgtt
gagggcttattggatgccaccagtggtgctgatgctgacctactgctccgctaccgtgaa
tgtcatctgcttgtactgaaagctttgcaggatggccgtgcctatgggtccccgtggtgt
aataaacagattaccagatgcctgattgaatgccgggatgagtataaatacaatgtagaa
gctgtagagctgctaatccgcaatcaccttgttaacatgcagcagtatgaccttcattta
gcacagtcgatggagaatggcttgaactacatggcagtggcatttgccatgcaactggtg
aagatcctgttggtggatgagaggagtgtagctcatgtaaccgaggcggatttgttccac
acaattgagacgctgatgaggattaatgcccactccagaggaaatgccccagaaggatta
ccccagttgatggaagtggttcgatccaactatgaagcaatgattgaccgtgcccatgga
gggcctaattttatgatgcattctggaatttcccaagcctctgagtatgatgatccacca
ggcctgagggagaaggcggagtatctactgagggaatgggtgaatctctaccattcagct
gcagctggccgtgacagtaccaaagctttctctgcgtttgttggacaggtagagcttttg
gaaagaaagatgcaccagcaaggaatcctgaaaacggatgacctgatcactcgcttcttt
cgcctttgcactgaaatgtgtgttgaaatcagctaccgtgctcaagctgagcagcagcac
aatcctgctgccaaccccaccatgatcagagccaagtgctaccacaacctggatgccttt
gtgcggcttattgcactgctggtgaagcactctggggaggctaccaacacagtcacaaag
atcaacctgttgaataaggttcttggtatagtggtgggagttctccttcaggaccatgaa
gttcgccagagtgagtttcagcagcttccttaccaccgcattttcattatgttgctgtta
gaattaaatgctcctgagcatgtactggagactatcaactttcagaccctcacagctttt
tgtaacacatttcatatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctctcatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtacgcccagttgttgattgatctcttcaagtacttggctccttttctt
agaaatgtggaactcaccaaacctatgcaaattctctacaagggcactctgcgtgtattg
ctggtcctactgcatgatttcccagaattcctttgtgattaccactatgggttctgtgat
gtgatcccacccaactgtatccagctgaggaatctgattttgagtgccttcccacgtaac
atgagacttccagatcctttcactcctaaccttaaggtggacatgttaagtgagattaat
attgctccgcggatactcactaacttcactggagtgatgccacctcagttcaaaaaagac
ttggattcgtatctcaaaactcgctctcctgtcactttcctgtccgatttgcgcagcaac
ctacaggtatcaaatgaacccggcaatcgctacaacatccagctaattaatgcactggtg
ctctatgtaggtactcaggctattgcacacattcacaacaaaggcagcacaccctctatg
agcaccatcacccattcagcccatatggacatcttccagaatctggctgtggaccttgat
actgaaggtcggtatcttttcttgaatgcaattgccaatcagctgcggtaccccaacagt
cacacgcactacttcagttgcaccatgctttacctatttgcagaggccaacaccgaggct
atccaggaacagattacgagggttcttttggaacgactgattgtaaataggcctcaccca
tggggtctcctcattaccttcattgagctgataaaaaacccggcatttaagttctggaac
catgaatttgtccattgtgctccagaaattgagaagttgttccagtcagttgcacagtgc
tgtatggggcagaagcaggcacagcaagtgatggaagggactggtgccagttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (10)   
   RefSeq(pep) (10)   
DNA sequence (10)   
   RefSeq(nuc) (10)   
Protein domain (5)   
   Pfam (5)   
All databases (33)   

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