KEGG   Alligator mississippiensis (American alligator): 102569069
Entry
102569069         CDS       T03087                                 
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03018  RNA degradation
amj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102569069 (LSM8)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102569069 (LSM8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    102569069 (LSM8)
   03041 Spliceosome [BR:amj03041]
    102569069 (LSM8)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102569069 (LSM8)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102569069 (LSM8)
Spliceosome [BR:amj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102569069 (LSM8)
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 102569069
NCBI-ProteinID: XP_006262615
UniProt: A0A151PFL7
Position
Un
AA seq 96 aa
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq 291 nt   +upstreamnt  +downstreamnt
atgacgtccgccttggagaactacatcaaccgcactgttgctgtaattacctcggatgga
aggatgatagtgggaactctcaaaggttttgatcaaaccattaacttgattttggatgaa
agccatgaacgcgtattcagttcttcacaaggagttgaacaagtagtgttgggtttatac
attgtcagaggagataatgtcgctgtcattggtgaaattgatgaggagacagattcagca
cttgaccttggaaatattcgtgcagaacctttgaactcagttgtacactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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