KEGG   Alligator mississippiensis (American alligator): 102573227
Entry
102573227         CDS       T03087                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03030  DNA replication
amj03410  Base excision repair
amj03420  Nucleotide excision repair
amj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102573227 (RFC1)
   03410 Base excision repair
    102573227 (RFC1)
   03420 Nucleotide excision repair
    102573227 (RFC1)
   03430 Mismatch repair
    102573227 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amj03032]
    102573227 (RFC1)
   03400 DNA repair and recombination proteins [BR:amj03400]
    102573227 (RFC1)
DNA replication proteins [BR:amj03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102573227 (RFC1)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102573227 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_5 AAA_14 AAA_22 BRCT_2 AAA_30 Rad17 AAA_16 nSTAND3 AAA_33 RuvB_N AAA_7 AAA_17 AAA_18 AAA_19 RNA_helicase NTPase_1
Other DBs
NCBI-GeneID: 102573227
NCBI-ProteinID: XP_006258533
Position
Un
AA seq 1143 aa
MDIRKFFGVVSTGKKNECEAAKKTEKTKNGEGTSAGKKKRKEIKVKNSSNEDDTPKKQTK
KKKRIIYDSDSEEETQSVKKSKKLPERKQSSSKPDTVLKQDPVVYVSETDEEDDFVKKTC
LKLKENGASAHSCQGTAGVRKEDAKPQAKSKLLSPVKLTPTSALDYFGTGSVQQSEKILV
SSKRKEPSQSRDSTLEDEAIAKMLQLEEDAELERQLHEDEEFARTLAMLDETPKVKKVRN
DPEVKSTTLVTKMSPNTADKHKQSQKASSIHDGMNYDKKEQTKSESTRESCSRPEPSVDK
AMNKTLPLKPSSKLVALKQKEESKKKERESLSVAARERETSEKEEKATPKKERVSPKKPE
SVSPEDSEKKRVNYQAYRSFLNREGPKALGSKEIPQGGENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGSVSKKTNYLVMGRDCGQSKCDKASALGTKIIDEDGLFDLIQTMPGK
KSKYELAAEAEVNKAKSQGEKTPQKAGAAKKKNSSAKKETDSKKKKSTPGKGGSLKAFKK
ENAEVRKVLDFMQQAAETKHTSNAEETFVSEISTGGTEGLLWVDKYKPTSVKTIIGQQGE
QSCANKLLRWLRNWHENTSENKHAKPSKFGGRDDGTNFKAALLSGPPGVGKTTTAALVCE
ALGYSYVELNASDTRSKNSLKEVVAESLNNTSIKDFCSGTSPSVSTKHVLIMDEVDGMAG
NEDRGGIQELIGLIKFTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSV
AYKEGLKIPPPAMNEIIMAANQDIRQVLHNLSMWCAKDKSLTYDKAKADASKAKKDIKLG
PFDVVRKVFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQENYVHVKPVAAGNNLKKHLML
LSRAADSICDGDLVDTQIRRKQNWSLLPTQAIYASVLPGELMRGYMSQFPNFPSWLGKFS
STGKHERIIQELAMHMSLRTNTCKRTVNVEYLSYLRDAIVRPLTSLGVEGVPDAVTFMDS
YCLMKDDVENIMEISSWGGKPSPFSKLDPKVKAAFTRTYNKEAHLTPYALHVVKTSKRRA
GSTLTSELNEELNADELQSEEEQDTIENDAMIKQKKTKSSKVSKAEKSEEPKMEGKRKVK
MRR
NT seq 3432 nt   +upstreamnt  +downstreamnt
atggacatccgaaaattctttggggttgtatctactgggaagaaaaatgaatgtgaggca
gcaaaaaagactgagaaaaccaaaaacggggaaggaacttcagctggaaagaaaaagaga
aaggaaatcaaagtgaaaaattcatctaatgaagatgatacccccaaaaaacagacaaag
aagaaaaaaaggatcatctatgattcagattcagaagaggagactcagtcagtgaaaaag
tccaagaagctgcctgagagaaaacaatcatcttcaaaacctgatacagttctaaagcag
gatcctgttgtttatgtttcagagacagatgaagaagatgactttgttaagaaaacttgc
ttgaaactgaaggaaaatggggcgtcagcacacagctgccaaggaacagcaggagtgaga
aaggaagatgcaaaaccacaagctaaaagtaaactgttatctccagtaaagctgacacca
acttcagcacttgattattttggaactggtagtgtccaacaatcagagaagatactcgta
tcaagcaaaagaaaagagccttctcaaagcagagattccacactggaagatgaggccatt
gctaagatgttgcagcttgaggaggatgcagagctggagagacagctgcatgaagatgaa
gaatttgctaggactttggctatgctggatgaaacaccaaaggtgaaaaaggtgcgtaac
gatccagaagtaaagtcaacaactttggttaccaagatgagtccaaacacagcagacaaa
cataagcagtctcaaaaagcaagctcaatacatgatggaatgaattacgataagaaggaa
caaactaaatctgaaagtacaagagaatcttgttcacgtccagaaccatcagttgataaa
gctatgaataagaccttgcctttgaaacctagttccaagctggtggctctgaagcaaaaa
gaagaaagcaaaaaaaaggagagagagagtctgagtgtagcagcaagagagagagaaact
tcagaaaaggaagaaaaagcaacaccaaagaaagagagagtttctcccaaaaagcctgag
tctgtaagtcctgaagactctgaaaagaaacgagttaactaccaggcctatcgaagcttc
ctcaatcgagagggtccaaaagcgttggggtccaaagagataccacaaggaggtgaaaac
tgcttagaaggccttacatttgtaattaccggagtcctggagtctattgaacgagatgag
gccaagtctttgattgaacggtatggaggaaaagtaactggcagtgtcagcaagaagacc
aattatcttgttatgggtcgtgactgtggtcagtctaaatgtgataaggcatctgcttta
gggacaaagattattgatgaagatggcctatttgatctgattcaaactatgcctggcaaa
aagtccaaatacgaattagcagctgaagcagaggtaaacaaagcaaagtcacaaggggag
aagaccccacagaaagctggtgctgccaagaaaaaaaatagctcagctaagaaagaaact
gattctaaaaaaaagaaatcaacgcctggaaaggggggcagtctcaaagcattcaagaaa
gaaaatgctgaagtgcggaaagttctggactttatgcagcaagcagcggagacaaaacat
acctcaaatgctgaggagacttttgtttctgagataagcacaggtggaacagagggcttg
ctgtgggtggataaatataagcccacgtcagttaaaacaataatcggacagcaaggagaa
cagagctgtgctaacaaactgctacgatggctccggaactggcatgagaatacatccgag
aacaaacatgcaaaacccagtaaatttggaggcagagatgatggtactaattttaaggca
gcattgctctcgggtccaccaggtgttggcaaaactactacagctgctttagtttgtgag
gcattgggctacagctatgtggagctgaatgccagtgacactcgtagcaagaacagtttg
aaagaagtggtggctgaatctctaaacaataccagcatcaaagacttctgttccggaact
tccccttcagttagcacaaagcatgtactgatcatggatgaggtggatggaatggcaggc
aatgaagaccgaggaggaatacaggagttaattggattgatcaagtttacaaagatacct
atcatctgcatgtgtaatgatcggaaccatcccaaaattcgttctctggtccattattgt
tttgatcttcgttttcagagacctcgggtagaacagattaagggtgccatgatgtctgtt
gcatataaagaaggtttaaagatcccaccacctgcgatgaatgagataatcatggcagca
aatcaggatatcaggcaggttttgcacaatcttagtatgtggtgtgcaaaagataaatca
ttgacatatgataaggccaaagctgatgccagcaaagccaaaaaggacatcaaactgggg
ccctttgatgtcgtccggaaagtgtttgcggctggtgaggagactgctcatatgtctctt
atagacaaatcggaccttttcttccatgactactctctagcacctctttttgttcaggaa
aattatgtacatgtgaagcctgtcgctgctggaaataacttgaaaaagcatttgatgctg
ctgagcagagcagcagatagcatctgtgatggtgatctcgttgacactcagattcgcagg
aagcagaactggagccttcttcctacgcaggctatttatgccagtgttcttccgggagag
ctgatgagaggttacatgtcccagtttcctaacttcccaagctggctggggaaattttcg
tctacaggcaaacatgagcgtatcattcaagaactggcaatgcacatgagtctcagaacc
aacacgtgcaagagaacagtgaacgtagagtatttgtcatatttgcgggacgcaattgtc
agacccttgacaagtttaggagtagaaggtgtgccagatgctgtaacatttatggactcc
tactgcttgatgaaagatgatgttgaaaatatcatggaaataagtagctggggaggcaaa
cctagtcccttctctaaactggatcccaaggttaaagcagcttttacacgcacctataac
aaagaggcccatctgactccatatgcactgcatgtagtgaagacatctaaacggcgagca
ggatccactctgacttcagaactgaatgaagaattgaatgctgatgaactccagtctgag
gaagagcaagatactattgaaaatgatgcaatgatcaagcaaaaaaagacaaagtcttcc
aaggtgtcaaaagcagaaaaaagtgaagaaccaaaaatggaagggaaaagaaaagtaaaa
atgaggcgatga

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