KEGG   Alligator mississippiensis (American alligator): 102576388
Entry
102576388         CDS       T03087                                 
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03013  Nucleocytoplasmic transport
amj03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102576388 (UPF1)
   03015 mRNA surveillance pathway
    102576388 (UPF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    102576388 (UPF1)
Enzymes [BR:amj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     102576388 (UPF1)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     102576388 (UPF1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102576388 (UPF1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 DEAD Helicase_RecD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 102576388
NCBI-ProteinID: XP_006271078
Position
Un
AA seq 1117 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQPGPGQGPG
AAGVGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMISAGPSHVPAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQ
KNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3354 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcctggacacggaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccgcccgggccggggcagccggggccggggcagggcccgggc
gcggccggcgtggggcagggcccgccggggcccatcgaggcgcaggttaatggacctgat
ggcatcctacagaacggtgccgtggatgataatgtggctaaaaccagccaacttctggca
gagttgaactttgaagaagatgaagaagacacctattataccaaggatcttcctgtgcat
gcttgcagttactgtggcattcatgacccagcctgcgtggtttactgcaacaccagcaaa
aagtggttctgcaacgggcgtggcaatacatccggcagccacattgtaaaccatctggtg
agagccaaatgcaaggaggtaactctccacaaagacgggcctcttggagagactgtcttg
gagtgctacaattgtggatgccggaacgtgttcctccttggcttcattcctgcaaaggct
gactcggtagtagtcttgctgtgcaggcaaccatgtgccagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaagaccgctgcttcctttcctgg
ctggtaaagattccctctgaacaggagcagctgcgagcccgtcagatcacagctcagcaa
attaacaaactggaggaactctggaaggaaaacccctctgccacccttgaagacttggaa
aaacctggtgttgatgaagaaccgcagcatgtcttacttcgatatgaggatgcttatcag
taccaaaatatctttggacctttagttaagctggaggcagactatgacaagaaactcaag
gaatcccagacccaggataacatcacagtgagatgggacctaggcttaaacaagaagaga
attgcttacttcactttgccaaagactgactcagatatgcgtcttatgcaaggagatgag
atctgcctgaggtataaaggagacctggcccctctgtggaaaggaattggtcatgttatc
aaagtcccggataattatggtgatgagatagccattgagctgagaagcagcgttggagca
cctgtggaggttactcataacttccaggtggattttgtttggaagtctacttcatttgac
agaatgcaaagtgctttaaaaacatttgcagtggatgaaacttctgtgtctggctacatc
taccacaagctgttaggtcatgaggtagaagatgtgattattaaatgccagctgccaaag
cgttttacagcgcaaggactgcctgacctcaaccattctcaggtttatgctgtgaagact
gtcttgcagcgtcctctgagccttatccaaggtccccccggcacaggaaaaacagtgaca
tcagcaacgattgtctaccatctagctaggcagggcaatgggcccgtgttagtttgtgcc
ccaagtaacatagctgtggatcagctgaccgagaagattcatcagacgggactgaaagtg
gttcgcctgtgtgctaaaagtcgtgaggcaatcgattctcctgtatctttcttggcattg
cacaaccagatcagaaacatggacagtatgcctgagcttcagaaactgcagcagctgaaa
gatgaaactggagaattgtcatctgctgatgagaagcgttatcgtgcactgaagcgaaca
gcagaacgtgaattacttatgaatgcagatgttatctgctgcacgtgtgtgggagcaggt
gacccgagacttgccaaaatgcagtttcgctccattttaattgatgaaagcacgcaggct
actgaaccggagtgcatggtgcccgtggttcttggagcaaagcagctgatcctggtcggt
gaccactgccagctgggtcctgttgtgatgtgtaagaaagctgcgaaggcgggcctgtct
cagtctctctttgagaggcttgtggtgttggggatccgtccaatccgcctgcaagtgcag
tatcggatgcaccctgcacttagtgcttttccatccaacatcttctacgagggctctctc
cagaacggcgtcactgcagcggaccgtgtgaaaaagggatttgatttccagtggccccag
ccagataagccgatgttcttctatgtgacccaggggcaggaagaaattgccagttcaggc
acctcttacttgaacaggacggaagctgctaacgtggagaagataactacaaagctgttg
aaagctggtgccaaaccagatcagattggcattattacaccctacgagggccagcgatct
tacctggtgcagtacatgcagttcagtgggtccttgcatacaaagctctaccaggaagtg
gaaatcgcaagtgtcgatgctttccagggacgggagaaggattttattatcctttcttgt
gtaagagccaatgagcaccaaggaattggatttttaaatgatcccagacgtcttaacgtg
gctcttaccagagcaagatatggagtcattattgttgggaacccaaaggctctgtctaag
cagcctctttggaaccacctgctgaactactacaaagagcagaaggtgctggtagaggga
ccactgaacaacctccgggaaagcctcatgcagttcagcaagcctcgtaaacttgtcaat
accatcaaccccggtgcccgtttcatgacgactgccatgtatgacgcacgtgaagctatt
atcccaggatctgtctatgacaggagcagtcaagggcgcccatccaacatgtacttccag
actcacgaccagatcgggatgattagtgctgggcccagccacgtccctgcgatgaacatt
cctatccctttcaatctcgtcatgccacccatgccaccaccaggatacttcgggcaggcc
aacggcccggcggcaggacgcggcacacccaaagggaagactggccgtggcgggcgccag
aaaaatcgttttgggattcctggaactagccagtcgaaccttcccaacagtcaggcgagc
caagacgtggtgtcccagcctttctcccagggtccactgactcagggctatatctccatg
agtcagccgtcgcagatgagccagccaggactctcccagccagaattatcacaggacagt
taccttggtgatgagtttaaatctcagattgatgtggcgctgtcacaggattctacctac
cagggtgaacgtgcatatcaacacggtggagtgacgggactgtcacagtattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (17)   
   Pfam (17)   
All databases (33)   

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