KEGG   Alligator mississippiensis (American alligator): 109280183
Entry
109280183         CDS       T03087                                 
Symbol
EXOSC3
Name
(RefSeq) exosome component 3
  KO
K03681  exosome complex component RRP40
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109280183 (EXOSC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amj03019]
    109280183 (EXOSC3)
Messenger RNA biogenesis [BR:amj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     109280183 (EXOSC3)
SSDB
Motif
Pfam: RRP40_N_mamm RRP40_S1 KH_6 RRP4_S1 Rrp40_N
Other DBs
NCBI-GeneID: 109280183
NCBI-ProteinID: XP_019352729
Position
Un
AA seq 258 aa
MAASGLSAEVDVGQVVLPGDVLLLPAAPNADGERLRLGPSSAPRGRLLCGPGLRRCAAGL
LVTKCGLLRHRPPAGAGTGGGAYWVDSQQKRYVPVKGDPIIGIVTAKAGDIFKVDVGGSE
QASLSYLAFEGATKRNRPNVQVGDLVYGQFIVANKDMEPEMVCIDSSGRANGMGIIGHEG
LLFKVSLGLIRKLLAPNCEIIQELGQLYPFEIVLGMNGRIWVKAKTVQQTLIVANILEAC
EHMTSEQRKQALAKLSES
NT seq 777 nt   +upstreamnt  +downstreamnt
atggcggcgagcgggctgtcggctgaggtggacgtgggccaggtggtgctacctggggac
gtgctgctgcttcccgcagctcccaacgccgacggggagcggctgcggctgggcccgagc
tcggcgccgcggggcaggcttctgtgcgggcccgggctgcgtcgctgcgccgcggggctg
ctggtcacgaagtgcgggctgctgcgccaccgcccgccggccggggccgggacaggcggc
ggtgcctactgggtagactcgcagcagaagcggtatgtcccagtcaagggagatcctata
ataggcatagtgactgccaaggcaggtgacatcttcaaggtagatgttggtggaagtgag
caagcatctttgtcatacttagcatttgagggtgcaaccaaaagaaacaggccaaatgtt
caggtgggagatcttgtatacggtcagttcattgtagcaaataaagatatggaaccagaa
atggtctgcatagatagcagtggaagagcaaatggaatgggtataattggacatgaaggc
ctactattcaaagtctccttagggctaataagaaaacttttagctcctaattgtgaaatc
atccaggaattgggacaactttacccttttgaaatagtgcttggaatgaatggaagaata
tgggtaaaggcaaaaacagttcaacagactttaattgtggcaaatatcttggaagcctgt
gaacatatgacatcagaacaaagaaagcaagcacttgccaaattgtcagagagttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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