KEGG   Ailuropoda melanoleuca (giant panda): 100471536
Entry
100471536         CDS       T01329                                 
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X2
  KO
K08132  collagen type XII alpha
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:aml00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100471536 (COL12A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:aml00535]
    100471536 (COL12A1)
Proteoglycans [BR:aml00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   100471536 (COL12A1)
SSDB
Motif
Pfam: fn3 VWA VWA_2 Pur_ac_phosph_N Collagen Interfer-bind NDNF DUF4998 Copine
Other DBs
NCBI-GeneID: 100471536
NCBI-ProteinID: XP_019661761
Ensembl: ENSAMEG00000014368
Position
19:complement(26627467..26741446)
AA seq 3065 aa
MQTRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWARPADPIVGYRITVD
PTTDGPTKEFTLAASTTETLLSDLIPEIEYVVTITSYDDIEESVPVIGQLTIQTGGPTKP
GEKKPGKPEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIGALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLIKNTFTESAGARAG
FPKVAIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVIEPPSNLVAMEVSSKYIKLSWSPSPSP
VTGYKVLLTPMTAGSRQHALSVGPQTTILSVRDLSADTEYQISVSAMKGLTSSEPISIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLIKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRGN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSETTSYSFKVNWSPAGENVF
SYHITYKDATGDDEVTVVEPASSTSVILNNLKPETLYLVNVTAEYEDGFSVPLSGEETTV
EVKGAPRNLKVTDETTDSFKITWTQAPGRVLRYRIIYKPAAGGESKEVTTPANQRRITLE
NLTPDTKYEVSVIPEYFSGPGSPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWTGAPGK
VKQYLVTYVPAAGGETQEVTVRGHTTSTVLRGLNEGTQYSLSVTALYASGAGDALHGEGT
TLEERGSPTDFVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDIETGEKSLPGDAIHT
VIENLQPETKYKVSVFAVYSSGEGEPLNGEATTELSQDSKILKVDEETENTMRVTWKPAP
GKVINYRVVYRPRGSGRQMVAKVPPTVTSTVLKRLQPQTTYDITVLPMYKTGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLIGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEIFEIGPKRVQIALAQYSGDPRTEWQLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQSFKTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEDELKMIATDPDDTHAYNVADFESLSKIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSLRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLESSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSMNIYDVSPTTMHVQWQPVGGA
TGYTLSYEPTNATEPRKPKEMHVGPTVNDVELTDLFPNTEYAVTVQAALHDLTSEPVTAR
EVTLPLPKPRDLRLRDVTHSTMNVLWEPAPGKVRKYIIRYKTPEDDVKEVEVDRSRTSTP
LKDLLSQTLYTVGVSAVYDEGESPPVTAQETTRTVPAPTNLRITEVTPESFRGTWDHGAS
DVSLYRITWAPFGSSDKMETILNGDENTLVFENLNPNTLYEVSVTAIYPDESESDDLTGS
ERTPRLIPLTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRAQKYRITYQPSTGEGNEQT
TTIGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTS
TLNARWDHAEGNPRQYKLFYAPTAGGPEEMVPIPGNTNYAILRNLQPDTPYTVTVVPVYA
EGDGGRTSDTGRTLVRGLASNVHVYNPTPNSLDVRWDPAPGPVQQYRIVYSPVAGTRPSE
SIVVPGNSRTVHLERLIPDTPYSVNIVALYSDGEGNPSPGQGRTLPRSGPRNMRVFGETT
NSLSVSWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVMLQPLQPDTPYKITVIAI
YEDGDGGHLTGNGRTVGLLSPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
MEVFVGEMTSYTLHNLNPSTTYDVDVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQVGWD
TFCVRWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDSDYGVTVFVQTPN
LEGPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDN
FNKVVKFIFNTVGAFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKAQALGALQNIRYRG
GNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVV
GVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTS
PGFKMLEAYNLTEKNFASVPGVSLESGSFPSYSAYKLQKNAFVNQPTADLHPNGLPSSYT
IILLFRLLPETPTDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTD
EVKTLFYGSFHKVHMVVTSKSVKVYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKS
ATFQIQNFDIVCSPVWTSRDRCCDIPSRRDEAKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGISGAVGPPGPRGDTGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPG
LPGRIGTPGLPGPPGPVGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG
DHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYHSSR
NQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGIGSPGPRG
PPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQG
YPGSG
NT seq 9198 nt   +upstreamnt  +downstreamnt
atgcagaccaggcttcccccagcgcttgccgccctgggcgcggccctgctcctgtcttcc
attgaggcagaagttgacccaccttcagacttgaattttaaaataatagatgaaaatact
gttcatatgtcatgggcaagaccagctgatccaattgtgggttacagaataacagtggac
cctacaacagatgggcccactaaagaatttacccttgcagctagtaccactgaaacttta
ttatcagaccttatacctgaaatagagtatgtggtgacaatcacttcatatgatgacata
gaagaaagtgtaccagttataggacagttaacaattcaaacaggtggtccgacaaagcca
ggtgagaagaaacctggaaaaccagagatacaaaaatgctctgtcagtgcctggactgat
ctagtgttcctcgtggatggctcatggagcgtgggaagaaataattttaagtacatttta
gactttattggtgctcttgtgtctgcttttgacatcggagaagagaagacaagggttgga
gttgttcagtacagctctgataccaggacggaatttaacttaaatcagtactaccaaaga
gatgagcttcttgctgcaattaaaaaaattccatacaaaggtggcaacacaatgacaggg
gatgccattgattacttaattaaaaatactttcacggaatctgctggagcgagagctggc
tttcctaaagtggcaattattattacggatggcaaatcccaggatgaagtggaaattcca
gcaagagagcttcgaaatataggggttgaagttttctccttgggcattaaagctgcagat
gcaaaagaactcaaacaaatcgcctccacaccttcattaaaccacgttttcaacgtggcc
aattttgatgcaattgtggatattcagaatgagatcatctcccaggtgtgctctggtgtt
gatgaacaacttggtgaattggttagtggagaagaagttatcgaacctccttcaaatctg
gttgccatggaagtctcatcaaaatacattaagctaagttggagtccatctcctagccca
gtgactggctataaagtccttcttacaccaatgactgctggaagccgacagcacgctctc
agtgtgggaccgcagaccaccattctcagtgttcgtgacctttcagcagacacagaatac
cagattagtgtttctgccatgaagggactgacatccagtgaacccatttcaataatggaa
aagactcagccaatgaaagttcaagtggaatgctcacgtggtgtggacataaaggccgat
atcgtatttctggttgatggttcctatagcattgggattgcaaactttgttaaagttaga
gcctttctggaagttctcataaaaagttttgagatttcaccaaatagggtacagataagt
cttgtccagtacagccgggatcctcatactgagttcactttgaaaaaattcaccaaagtt
gaagatataatcgaagcaataaacaccttcccctacagagggggatccacaaacactggg
aaagcgatgacttatgtcagagagaaaatatttgtgcctagcaagggttcaagaggaaac
gtaccaaaggtcatgattcttatcactgatgggaaatcttcagatgctttcagagatcct
gctataaaactaaggaattcggatgtggaaatctttgcagttggtgtgaaggatgctgtt
cgctctgaattagaagctattgcctcgcctcctgctgagacccatgtgttcacagtggaa
gattttgatgcttttcagagaatatcttttgaactcacacagtctatctgccttagaatt
gagcaagaattggcagctataaagaaaaaagcatatgtgcctccaaaggatcttagtttt
tctgagacaacttcttacagtttcaaagttaactggtctcccgcaggagaaaatgttttt
tcgtaccacatcacctacaaggacgctacaggggatgatgaggtcacagtggtggagcca
gcgtcaagcaccagcgtcattctcaataacctgaagccagagaccctgtacttagtcaac
gtgactgcagagtatgaggatggcttcagtgttcccttatctggagaggagaccactgtg
gaagtaaaaggagcacctcgaaacctaaaggtgacagatgaaactacagacagctttaaa
atcacctggactcaagctccagggagagttttaaggtaccgaattatatataaaccagct
gctggtggagaaagcaaagaagttactacccctgccaatcagaggaggataacgcttgag
aacctgactccagacacaaaatacgaagtatctgtaattcctgaatatttctcaggacct
ggctctccgttgacgggaaatgcagcaactgaagaagttagagggaacccaagagactta
agagtttctgaccctacaacatcaactatgaaattatcttggaccggggcaccggggaaa
gtgaaacagtatctcgtcacgtacgtcccagcggcagggggtgaaactcaagaggtcact
gtgagaggacatacgaccagtactgtgctgagaggattaaacgaagggacacagtactcc
ttatcggtgacggccttgtatgcatctggggccggagatgcccttcatggtgaaggaacg
acactcgaagaacgtggttcacctacggatttcgttactaaagatatcactgacacatca
attggggcatattggacatctgctccaggaatggttcgaggttacagggtctcatggaaa
tcgctctatgatgatattgagactggagagaaaagtcttcccggagatgcaattcacact
gtgatagaaaatctgcagccagagaccaaatacaaggtttcagtctttgcagtttacagc
agtggagaaggagaacctttaaatggagaagccacaactgaattatctcaggattcaaaa
atcttgaaagtggatgaagaaacagaaaacacaatgagagttacctggaaaccggccccc
gggaaagtcatcaactaccgggttgtgtatcgcccccgtgggagtgggagacaaatggtt
gccaaagtgccacccacagtcacctcaacagtgttaaagcgacttcaaccccagactacg
tatgacatcacagttctcccaatgtataagacaggagaaggaaagcttaggcaaggatca
ggaacgacagcttctcgatttaagtcgcccagaaacctcaaaacgtcggacccaaccatg
tcaagcttccgagtgacttgggagcctgctcctggggaagtaaagggttataaagtcacg
ttccaccccacaggggatgacagaagactgggggagctagtggttggaccatatgacaat
acagttgttttggaggaacttagggcaggtaccacctataaagtaaatgtttttggaatg
tttgatggaggagagagttcgccacttattggacaagaaatgacaaccctttctgacaca
actgtaatgccgattttatcctctggaatggagtgtctcaccagagcagaagcagacatt
gtgttgctggtggatggatcatggagcattggccgggcaaattttagaaccgtgaggagt
ttcatctctcgcattgtggaaatctttgagattggtcccaaaagagtacagattgccctt
gctcagtatagtggggaccccagaacagagtggcagctaaatgctcacagagacaagaag
agcttgttgcaagctgtggcaaacttaccatacaaaggaggcaatactctcacaggcatg
gctttgaatttcattcgtcaacagagcttcaagacccaagctggcatgaggcctcgagct
cgaaaaattggtgttctcatcacggatggaaaatcacaagatgatgttgaggcaccttca
aagaagctcaaggatgagggtgtggagctgtttgctattggtattaaaaatgctgatgaa
gatgaattaaagatgattgcaacagatcctgatgacacccatgcatacaacgtggcagat
tttgaatcactctctaagatcgtagatgacctcaccattaacttgtgtaacagcgtcaaa
ggtccaggtgacttggaagcaccttctaacctagttatttctgagcgaacccatcgttct
cttagagtgagctggacacctccttctgacagtgtggataggtataaggtggaatactac
ccagtttctggagggaaacggcaagaattttatgtgagccgactggaaagtagcacagta
ctgaaagatctgaagcctgaaaccgagtatgttgttaatgtgtattctgtggtggaagat
gaatatagtgaacctctgaagggcacagaaaaaaccttaccggtccctgtggtcagcatg
aatatttatgatgttagccctaccaccatgcatgtgcaatggcagccagtgggaggggct
actggctacaccttgtcgtatgaacccaccaacgccacagaaccaagaaaacccaaagag
atgcacgtggggccaacagtgaatgatgtggaactgactgatctttttcccaacactgag
tatgcagttacagtccaggctgccttgcacgacctcactagtgaacctgtcactgctcga
gaagtcacgttgcctttacccaaacctcgagatctgagactcagagacgtgactcacagc
accatgaatgtcttatgggaacccgctcctggaaaagtgcgtaaatatatcattcgctac
aaaacaccagaagacgatgtcaaagaggtagaggtagacaggtcacggaccagcacccct
ctcaaagacctcttatcacaaaccctgtacacagtaggcgtttctgcagtgtatgacgag
ggggagtctcccccagtgactgctcaggaaactacccgcactgtgccagccccaacaaac
ctaaggattaccgaagtaacgccagagagcttccgagggacttgggatcatggagcttcg
gatgtgtccctctacaggataacctgggcgccttttggaagctcagataagatggagacc
atcttaaatggagatgaaaatactttggtgtttgaaaacctgaacccgaacactctctat
gaagtttctgttactgccatttatcctgatgagtcagaaagcgatgacctgactggcagt
gagcgcacaccacgtttgatacccttaacaacacaagctccaaaaagtggcccacgaaac
cttcaggtgtacaacgcaacctctaacagcttgactgttaagtgggatcctgccagcggt
cgtgcgcagaaatacagaatcacttaccagccttcaacaggagagggcaatgagcaaacg
accacaattggggggcggcagaacagtgtggtcctgcagaaactgaagcccgacactcct
tataccatcaccgtgtcctccctgtatcctgatggtgaaggaggtcggatgacaggaaga
ggcaagaccaagcctctgaataccgtgcggaatctcagagtgtacgacccttctaccagc
accttgaatgctcgctgggaccacgcggaaggaaaccctcgtcagtacaagctcttctat
gcaccaacagcaggcggtccagaggaaatggtaccaatccctgggaataccaattatgcc
attctcaggaatctgcagccggataccccatacaccgttacagtagttcctgtttatgct
gaaggtgatggaggacgcacatcagatactggaaggacattggtgagagggctggcaagt
aatgtccacgtgtacaatccgacaccaaacagcctcgatgtccgctgggaccccgcgccc
gggcctgtgcagcagtatcgcatcgtgtattctcctgtggctggcacgagaccctccgaa
tctattgtggtgccaggaaactcgcgcacagtacacctggagcggctgattcccgacaca
ccctattctgtgaacattgtagctctctactcggatggagaggggaatcccagccctggc
cagggccgaacgcttccacgaagtggaccaagaaatatgagagtctttggggagacaacc
aatagcctctctgtatcctgggatcatgccgatgggccagttcagcaatacaggatcatt
tattctcccactgttggagatcccattgatgaatataccacagtcccaggcagaaggaat
aatgtgatgctgcagccgctgcaacctgacactccatataagattactgttattgctatt
tatgaagacggagatggcggccatctaacagggaatggaagaactgtgggactgctttca
cctcaaaacatacacatctctgatgaatggtacacgagattcagagtatcctgggaccct
tcaccctctccggttcttggatacaaaattgtgtataagccagtgggttccaatgagccc
atggaagtttttgttggagaaatgacatcatacacgttacacaatctcaatcctagcacc
acctatgacgtggatgtttatgctcagtatgattctggactcagtgtccccctgacggat
caaggcaccaccttgtatttaaatgtgacagatctgaaaacttaccaggttgggtgggat
acattctgtgttagatggtcacctcaccgggcagccacctcctacaggctaaaactaagc
cccgcagatggaaccagaggacaagaaatcacagtgcgtggatcagaaaccagtcactgc
tttactggactctcaccagactctgattatggcgtcactgtttttgtgcagacacctaat
cttgagggacctggagtctctgtcaaagaacataccactgtaaaaccaacggaagcccct
acggagccacccacgccccctccccctcccacaattccaccggcccgggatgtatgcaaa
ggggccaaggcagatattgtattcttgactgatgcctcctggagtatcggggatgataat
tttaacaaagttgtaaaattcatcttcaatactgtgggagcctttgatgaaatcagtcct
gctggaattcaggtctcatttgtgcagtacagtgacgaggtcaagtctgagttcaagctg
aacacgtacaatgacaaggcccaagccctgggggccctccagaatattaggtacagagga
ggcaacacaagaacaggcaaggctctcacatttatcaaggagaaggtcttgacctgggag
agcggcatgaggaagaatgtccccaaggtgctggttgtggtcacagatggtcggtcacag
gatgaggtcaagaaggcggctttggtcatccagcagtcagggttcagtgtctttgtagtt
ggggtggctgatgttgactacaacgagcttgccaacatcgccagcaaaccaagtgaacga
cacgtgttcattgttgatgactttgaatcttttgagaagattgaagacaacctcattaca
tttgtctgtgaaactgccacttcaagttgtcctctcatttatttggatggctacacctca
ccaggctttaagatgcttgaagcatacaacctgacagaaaagaattttgcttctgtacca
ggagtctctttggagtcagggtctttccccagctactcagcttacaagcttcagaagaat
gcctttgtgaatcagcctacagcagatctacacccaaatggactcccttcttcatacacg
attatattattgttcagacttctcccagaaactcccactgacccttttgctatttggcaa
atcacagacagagactacaagccacaagttggagtaattgcagatccttctagcaagaca
ttatcattctttaacaaggatacaagaggtgaggtgcagactgttacgtttgacacagat
gaagtgaagacattgttttatggaagttttcacaaggttcatatggtagtgacctcaaaa
agtgttaaggtttatatcgactgctatgaaatcatagaaaaagacatcaaggaagctgga
aatatcacaaccgatggttatgaaattcttggaaaacttcttaaaggggagaggaaatca
gccacattccaaatccagaattttgatattgtctgcagtccggtgtggaccagtagagac
agatgctgtgatattccctctaggagagatgaagcaaaatgccctgctcttccaaatgct
tgcacatgtacacaggacagcgttgggcctccaggtccacccgggcctgcgggaggacct
ggcgctaaaggtcccagaggtgaaagaggaatcagtggggcagttgggccccctggccct
cgtggagacacaggtcctccaggcccccagggtcctccaggtccccagggacccaacgga
ctctctattccgggagaacaagggcgccaggggatgaaaggtgatgctggagagccaggg
cttcccggccgaataggaaccccaggattacctggcccaccaggaccagtgggacctcca
ggagatagaggctttactgggaaagatggtgcaatgggacccaggggcccccctgggcca
ccgggaagcccaggctccccaggcgtcacaggaccgagcgggaaaccaggaaaacccgga
gaccacggcagacccggtccatctggattgaaaggagagaaaggcgatagaggagacatt
gcttcccagaacatgatgcgagcagttgcaagacaagtctgtgaacaattgataagtggt
cagatgaacagattcaatcagatgctgaatcagattccaaatgactatcactccagtcgt
aaccaaccaggcccaccgggtcccccaggcccccctggcagcgcgggagccagaggagaa
ccaggacctgggggacgaccgggcttccctggcacaccagggatgcagggacccccgggt
gaacgagggttgccgggagagaagggcgaaaggggtattgggtctccaggacctcgaggg
ccgcctggccccccaggtccacaaggagaatccagaacaggtccaccagggtccacagga
tcaagaggaccgcctggccccccgggtcgtcctggaaactcaggtatccgagggccccca
ggtcctcctggatactgtgactcgtcccagtgtgccagcatcccatacaatgggcaaggc
tatccaggttccggctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (9)   
   Pfam (9)   
All databases (48)   

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