KEGG   Ailuropoda melanoleuca (giant panda): 100473142
Entry
100473142         CDS       T01329                                 
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X7
  KO
K12879  THO complex subunit 2
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03013  Nucleocytoplasmic transport
aml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100473142 (THOC2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100473142 (THOC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aml03019]
    100473142 (THOC2)
   03041 Spliceosome [BR:aml03041]
    100473142 (THOC2)
Messenger RNA biogenesis [BR:aml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100473142 (THOC2)
Spliceosome [BR:aml03041]
 Complex C
  Other components
   EJC/TREX
    100473142 (THOC2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100473142 (THOC2)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 100473142
NCBI-ProteinID: XP_011232529
Ensembl: ENSAMEG00000014841
Position
X:complement(86984123..87096785)
AA seq 1601 aa
MAAATVVVPVEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASNVLNDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQEPNGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEHK
REIVEAKQIVRKLTMVVLSSEKIDEREKEKEKEEEKVEKPPDNQKLGLLEALLKIGDWQH
AQNIMDQMPPYYAASHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQ
AESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNSHPLLVK
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
KQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYE
REVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKSYMIPENEFHHKDPPPRNAVASV
QNGPGGGPSSSSIGSASKSDESSTEETDKSRERSQCGVKAVNKASSATPKGNSSNGNSSS
NSSKAVKENDKEKGKEKEKEKKEKTPATTPEARVLGKDGKEKPKEERPNKDEKARETKER
TPKSDKEKEKFKKEEKAKEEKFKTAVPNVESKSTQEKEREKEPSRERDIAKEMKSKENVK
GGEKTPVSGSLKSPVPRSDVAEPEREQKRRKIDTHPSPSHSSTVKDSLIELKESSAKLYI
NHTPPPLSKSKEREMDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDLAKRR
KEENGTMGVSKHKSESPCESPYPNEKDKEKNKSKSSGKEKGGDSFKSEKMDKISSGGKKE
SRHDKEKIEKKEKRDSSGGKEEKKQYPFHLIGVFNQCNGKL
NT seq 4806 nt   +upstreamnt  +downstreamnt
atggcggccgcaactgtggtggttcccgtagagtggataaagaactgggagaaatcaggg
agaggcgaatttttgcatttatgccggatcctcagtgaaaataaaagccatgatagttca
acttacagagatttccagcaggctctttatgagttatcataccatgtcattaaaggaaat
ctaaagcatgaacaggcatctaatgttcttaatgacattagtgaatttcgtgaggatatg
ccctccattcttgctgatgtattctgcatattagatattgagacaaattgtttagaagaa
aaaagcaagagagactattttacacaattggtattagcatgtttgtatttagtttcagac
acagttctaaaggaacgcttggatccagaaacattggaatcattagggcttatcaaacaa
tcacagcagttcaatcaaaagtcggttaaaatcaagacgaaactcttttataagcagcaa
aaattcaatttgttaagagaagagaatgaaggttatgccaagctgattgctgaattgggg
caagatttatctggaaatattactagtgatttaatcttagaaaatataaaatctttaata
ggatgctttaatctggatcccaatagagttttggatgtcattttagaagtgtttgaatgc
aggccagaacatgatgacttctttatatctttattagaatcttacatgagtatgtgtgaa
ccgcaaacactgtgtcatattcttgggttcaaattcaagttttaccaggaaccaaatgga
gagactccttcatctttatacagagttgcagcagtacttctacagtttaatcttattgat
ttagatgatctttatgtacatcttcttccagctgataattgcattatggatgaacacaaa
cgagaaattgtggaagctaagcagattgttagaaaacttacgatggttgtattgtcttct
gaaaaaattgatgagcgagagaaagaaaaggaaaaagaagaggagaaagtagagaagcca
cctgacaaccaaaagcttggtctgttggaagccttgttaaagattggtgattggcagcat
gcgcagaacattatggatcagatgcctccttactatgcagcttcacataagctaatagcc
cttgctatttgcaagctcattcacataactattgagcctctctaccgaagagttggcgtt
cctaaaggtgctaaaggttcacctgttaatgctttgcaaaataagagggcaccaaaacaa
gcagagagctttgaagatttgaggagagatgtcttcaatatgttctgttaccttggtcct
cacctttcgcatgatcccattttatttgcaaaagtggtgcgcataggcaaatcatttatg
aaagagtttcagtctgatggaagcaaacaagaagataaagagaaaacggaagttatcctt
agctgtttacttagcattactgaccaggtacttcttccatctctttctttgatggactgc
aatgcttgtatgtctgaggaactatggggaatgtttaaaacatttccatatcagcataga
taccgtctgtatggccagtggaagaatgaaacttataacagtcacccacttttagtaaaa
gttaaagcccaaacaatagacagagccaaatatatcatgaagcgtctaaccaaggaaaat
gtgaagccttctggaagacaaattgggaagttgagccacagcaatccaaccattttgttt
gattatatcttgtcacaaatacagaagtatgataacttaataacacctgtagtagattca
ttgaaatacctcacttcattgaattatgatgttttggcctattgtatcattgaagcttta
gctaatccagaaaaggagagaatgaaacatgatgacacaaccatctcaagctggcttcag
agtctggctagtttctgtggtgcagtttttcgtaaatatccaattgatcttgctggtctt
cttcaatatgtggctaatcagctaaaggcaggcaaaagttttgacctgcttatattgaaa
gaagtggtacaaaaaatggcaggaatagaaattacagaggaaatgacaatggaacaacta
gaggccatgactggtggagagcaactaaaagctgagggtggttattttggccagatcaga
aacactaaaaaatcctcccagagattaaaggatgcactattggaccatgatcttgctctt
cctctctgtttgcttatggctcagcagaggaatggggtaatcttccaggaaggtggagag
aaacatttgaaacttgtgggaaaactctatgatcagtgtcatgacaccctggtacagttt
ggtgggtttttagcatctaatctaagcacagaagattatataaagcgagtgccttcaatt
gatgtgctctgtaatgaatttcatacaccccatgatgcagcatttttcctgtccaggcca
atgtatgcacaccatatttcgtctaagtatgatgaacttaaaaaatcagaaaagggaagt
aaacagcagcataaagttcataagtacattacatcatgtgaaatggtgatggctcctgtc
catgaagcagtggtctccttacacgtttccaaagtctgggatgacatcagccctcagttc
tatgccacattctggtcattgacaatgtatgaccttgcagttccacacaccagctatgaa
cgggaagtcaataaacttaaagtccagatgaaagcaattgatgacaatcaggaaatgcct
ccaaataaaaagaaaaaagagaaagagcgttgtactgcccttcaggacaagcttcttgaa
gaagaaaagaaacagatggaacatgtgcagcgagttctacagagactgaaactagaaaag
gacaactggcttttagcaaaatctaccaaaaatgaaaccatcacaaaatttctacagctg
tgtatatttcctcgatgtattttttcagcaattgatgctgtttactgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaatttttccacacttctttgctatgatcgagtt
ttctctgatataatttacacagttgcaagctgtactgaaaatgaagctagtcgatatggg
agatttctttgctgcatgttagagactgtgaccaggtggcacagtgacagagccacgtat
gaaaaggaatgtggaaattatccaggattccttactatattacgggccactggatttgat
ggtggaaataaagctgaccaattagactatgaaaattttcgacatgttgtacataaatgg
cattacaaactaaccaaggcatccgtacattgccttgaaacaggcgaatatactcacatc
aggaatatcttgattgtgctaacaaaaatacttccttggtacccaaaagttttgaatttg
ggacaggctttggaaagaagagtgcataaaatctgccaagaagaaaaagagaagaggcca
gatctatatgcattggctatgggctactctgggcagttgaaaagtagaaagtcatacatg
atacctgaaaatgagtttcatcacaaagacccccctccgaggaatgcagtggccagtgta
caaaatgggcctggtggtgggccttcttcatcgtcgataggaagtgcatctaagtcggat
gaaagcagtactgaggagactgataaatcaagggagagatctcagtgtggtgtgaaagct
gttaataaagcttctagtgccacaccgaaagggaattcaagcaatgggaacagtagctct
aacagcagcaaagctgttaaagaaaatgacaaagaaaaagggaaagagaaagaaaaagag
aaaaaagaaaagactccagctactactccagaggccagggtacttggtaaagatggtaaa
gaaaaaccgaaggaagagcggccaaataaagatgaaaaagcaagagagacgaaggaaaga
acacccaagtctgacaaagagaaagaaaaattcaagaaggaagaaaaagctaaagaagag
aaattcaaaaccgctgtccccaacgtagaatcaaaatcgactcaagaaaaggaaagagag
aaggagccatccagagaaagagatatagcaaaggaaatgaaatcaaaggaaaatgttaaa
ggaggagaaaaaacaccagtttctgggtccttgaagtcacctgttccccgatcagatgtt
gcagagcctgaaagggaacaaaaacgccgcaaaattgatacccacccttctccatcacat
tcctcaacagtaaaggacagtctcatcgaactcaaggagtcttcagcaaagctctacatt
aatcatactcctccaccactgtccaagagtaaggagagagaaatggacaagaaagacttg
gacaagtcgagggaaagatccagagaaagagagaaaaaagatgaaaaggacaggaaagag
cggaaaagggatcattcaaacaatgaccgtgaagtgccgccggacttagccaagaggcga
aaagaggaaaatggaacaatgggggtttcaaaacacaaaagtgaaagtccatgtgagtct
ccttatccgaatgagaaagacaaggaaaaaaataagtcaaaatcttcaggcaaagaaaaa
ggcggcgattcttttaaatctgaaaagatggataaaatctcctccggtggcaaaaaggag
tccaggcatgataaagaaaagatagaaaagaaagagaaacgggacagttcaggaggaaag
gaagagaagaaacaatatccttttcatcttattggagtttttaatcagtgtaatggaaag
ctttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (9)   
   RefSeq(pep) (9)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (3)   
   Pfam (3)   
All databases (43)   

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