KEGG   Ailuropoda melanoleuca (giant panda): 100483807
Entry
100483807         CDS       T01329                                 
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03018  RNA degradation
aml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100483807 (LSM2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100483807 (LSM2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aml03019]
    100483807 (LSM2)
   03041 Spliceosome [BR:aml03041]
    100483807 (LSM2)
Messenger RNA biogenesis [BR:aml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100483807 (LSM2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100483807 (LSM2)
Spliceosome [BR:aml03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100483807 (LSM2)
 Complex C
  U2 snRNP components
    100483807 (LSM2)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 100483807
NCBI-ProteinID: XP_034517570
Position
5:complement(26930938..26938386)
AA seq 223 aa
MIKLSVCGRLHQEKPQRGDKPLQNSGDSWGSRLRGGSPPVREEVGRQEDPPLSRLKLPLG
SLPPVLPEPRVRRALLSLLRASAALFVAPARFRPAPRAGSHPGCRPAPRQLFQALAFTVR
PAARGLSTMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYP
HMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEALQQKQ
NT seq 672 nt   +upstreamnt  +downstreamnt
atgattaaactgagtgtctgcgggcggctccatcaagaaaaaccccagagaggcgataag
cctcttcaaaactcgggcgacagctggggctcgcgcctgcgtggtggaagcccgccagtc
cgggaggaagtgggaaggcaggaagacccgcccctttcccggcttaagctccccctgggc
tctctcccgccggttctccccgagccgcgagttcgccgcgcgctcctgtcattgctcaga
gcttccgcggctctttttgttgcgcctgcgcgattccgtcccgccccacgcgcgggctcg
catcccggctgccgcccggccccacgccagctgttccaggccctcgctttcacggtccgg
ccggcagcccgcggcttgagcaccatgctcttctattcctttttcaagtccctggtgggc
aaggatgtggtcgtggaactcaagaatgacttgagcatctgtggaaccctccattctgtg
gatcagtatctcaacatcaaactaactgacatcagtgttacagaccctgagaagtatcct
cacatgttgtcagtgaagaactgcttcatccggggctcggtggtccgctatgtgcagttg
ccggcagatgaggtggacacacagttgctacaggacgcagcaaggaaggaggcgctgcag
cagaaacagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (41)   

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