KEGG   Amycolatopsis mediterranei S699: RAM_09125
Entry
RAM_09125         CDS       T01822                                 
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
amn  Amycolatopsis mediterranei S699
Pathway
amn03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:amn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    RAM_09125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amn03400]
    RAM_09125
Enzymes [BR:amn01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     RAM_09125
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     RAM_09125
DNA repair and recombination proteins [BR:amn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     RAM_09125
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS TackOD1 HpcH_HpaI NFACT_N zinc_ribbon_9
Other DBs
NCBI-ProteinID: AEK40315
UniProt: A0A9R0NTI9
Position
1930057..1930926
AA seq 289 aa
MPELPEVEVVRLGLQVHVAGRTIREAEVLHPRAIRRHALGAEDFTQRLAGTRVEAARRRG
KYLWLELSDKEALLAHLGMSGQMLVQPEGAPDEKHLRVRLRFEDDGPELRFVDQRTFGGL
ALDDLSDIGSEVLLPDTIAHIARDPMDPEFDLDAAVRALRSRRTEVKRALLDQTLVSGIG
NIYADEALWRARLHWARPTEKLTMAKGRELLSAASDVMNAALGAGGTSFDALYVNVNGQS
GYFDRSLDAYGQEGMPCHRCGTAIRREPFMNRSSFSCPRCQPRPRANSG
NT seq 870 nt   +upstreamnt  +downstreamnt
atgcccgaacttcccgaggtcgaagtcgtccgcctgggcctgcaggtgcacgtcgcgggg
cggaccatccgcgaggcggaggtcctgcacccgcgcgccatccgccggcacgccctgggc
gcggaggacttcacgcagcggctcgccggcacccgcgtcgaggcggcgcggcgccggggc
aagtacctgtggctggagctgtccgacaaggaagcgctgctggcccacctcggcatgagc
gggcagatgctcgtccagccggagggcgcgcccgacgagaagcacctgcgggtgcgcctg
cgcttcgaggacgacgggccggagctgcggttcgtcgaccagcggacgttcggcggcctg
gcgctcgacgacctcagtgatatcggcagcgaggtcctgctcccggacacgatcgcgcac
atcgcccgcgacccgatggacccggagttcgacctcgacgcggcggtgcgcgcgctgcgg
tcgcggcgcaccgaggtcaagcgggcgctgctcgaccagacgctcgtgtcgggcatcggc
aacatctacgcggacgaagccttgtggcgcgcccgcctgcactgggctcggccgaccgaa
aagctgaccatggcgaagggccgcgaactgctgtccgcggcgtcggacgtgatgaacgcg
gcgctgggcgcgggcggcacgtcgttcgatgcgctgtacgtgaacgtcaacgggcaatcg
gggtacttcgaccggtcgctggacgcgtacggccaggaagggatgccgtgccaccggtgc
ggcacggcgatccggcgggagccgttcatgaaccggtcgtcgttctcgtgcccgcggtgc
cagccgcggccgagggcgaactcgggttga

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