KEGG   Anaplasma marginale Gypsy Plains: U128_00970
Entry
U128_00970        CDS       T02900                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
amp  Anaplasma marginale Gypsy Plains
Pathway
amp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:amp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    U128_00970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amp03021]
    U128_00970
   03400 DNA repair and recombination proteins [BR:amp03400]
    U128_00970
Enzymes [BR:amp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     U128_00970
Transcription machinery [BR:amp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     U128_00970
DNA repair and recombination proteins [BR:amp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      U128_00970
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: AGZ78641
Position
220259..224506
AA seq 1415 aa
MKMLDLYGYTSIAQSFDKICISIASPESIRAMSYGEIKDISTTNYRTFKVEKGGLFCPKI
FGPVNDDECLCGKYRKKRYRGIVCEKCGVEVTSSKVRRERMGHIELVSPVAHVWFLKSLP
SRIGALLDMPMKSIESILYSGDFVVIDPMTTPFSKGEVISESVYNQARDAYGDEGFIALT
GAEAIRELLVRLDLGAIRAGLRSELESTSSEMKRKKVVKRLRIIENFIASGNRPEWMILT
VIPVLPPDLRPLVSLENGRPAVSDLNHHYRTIINRNNRLEKLLKLNPPAIMIRNEKRMLQ
EAVDGLFDSSRRSYVSSRAGSMGYKKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
GLKLHQCGLPKKMALELFKPFICSKLKMYGVAPTVKLANKMIQSEKPEVWDVLDEVIREH
PILLNRAPTLHRLGLQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLTLQRAQAPDQEVMSFGEFSHVEYALH
EGIVHTSSKIKYRMQRCNSDGTIVSEVVETTPGRLILWQIFPQHKDLTFDLVNQVLTVKE
ITSIVDLVYRSCGQRETVEFSDKLMCLGFQYASQSGISFGCKDMIIPDTKAAHVENASEK
IKEFSIQYQDGLITRSERYNKVVDEWSKCTDLIARDMMKAISLSDEEGKLNSIYMMANSG
ARGSSSQMKQLAGMRGLMAKPSGEIIETPIISNFREGLSVFEYFNSTHGARKGLADTALK
TANSGYLTRRLVDVAQDCTVVEYDCKTKDGVVARAVIEGGAVVATLDSVVLGRVAAVDTY
NPVTEELLLSAGELIDEGKVEKIRVAGLDAVRVRSPLTCESKKGICSLCYGRDLAVGDLV
SIGEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGVEVSNLIAVLDAEVKLVNSNVVTDK
YGNQIVMSRSCEVVLLDSVGNEKMRHSVPYGAKLYVSDGQPVKMMDKMAEWDPYTIPIIT
EKTGTIKYVDLIYGVSINEVLDESTGISNRVVIDWKLHLQGANLRPRLVLLDEDGNIATL
YNDLEASYFVPIGAVLNVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPK
EHAIVSDVDGYVEFGKDYYRSKRRIFIRPVDKSLPAVEYLVPKGKHTIVNEGDFVHKGDL
LMDGDPDQHDILRVLGAEALASYMISEIQQVYRLQGVRIDNKHIEVILRQMLQKVEITDP
GDTMYLVGEHAGREEVMRLNRKLEEAGKKPVAYVPILQGITKASLDTNSFISAASFQETT
KVLTEAAFSGKEDPLYGLKENVIVGRLIPAGTGFIMNKVKKLAMLDQSDYATYYNSELRE
IMGDLGDELIAEGEAASPGRSGDGYLGNGGGVVDY
NT seq 4248 nt   +upstreamnt  +downstreamnt
atgaagatgttggatttgtacggctataccagcatagcgcagtcgtttgataagatttgc
atatccattgctagccccgagagcattagggcgatgtcctacggtgagatcaaggatatc
tctaccactaactatcgcacattcaaggttgaaaaaggcggccttttttgcccgaaaatc
tttggtcccgtaaatgacgatgaatgtctgtgtggaaagtataggaagaagcggtatagg
ggcatagtatgcgagaagtgcggggttgaagtcacttcttccaaggtgagacgggagagg
atggggcacatagagctggtttctcctgtggcacatgtgtggtttttgaaatccttgcct
tcacgtatcggggcattgcttgatatgcccatgaagtccattgaaagcatcctctacagt
ggggacttcgtggttatcgatcctatgaccactccattctccaagggggaggttatcagt
gaaagcgtgtacaaccaagcccgcgatgcctacggagatgaaggttttatcgccttaacc
ggggctgaggccatacgggagttactagtaaggctggatcttggggccatcagagctggg
cttaggagcgagctggagtctacctcatctgaaatgaaaagaaaaaaggtggtcaaaaga
ttgcggatcatcgaaaacttcatcgcttctggcaatagaccagagtggatgatactaact
gtaatccctgtgctgccaccggacctgaggcctttggtgtctttggaaaatggtaggcct
gcagtttccgatctgaaccaccactataggacgattataaaccgtaataacaggctggag
aagctgcttaagctcaacccgcccgcgattatgatccgcaatgagaagaggatgctgcaa
gaggccgtggatgggctttttgatagcagtaggcgcagctacgtttcaagcagggctggt
agcatgggctacaaaaagtctcttagtgacatgcttaagggaaagcaggggcggtttagg
cagaatttgctgggtaaaagggtagactattcgggtaggtctgtaatcgtcgttgggcct
gggttgaagttgcaccagtgtggcctgcccaagaaaatggccctggagctcttcaagccg
tttatttgttccaagcttaagatgtacggagtggcgccgacggtgaagcttgcaaacaag
atgatccagagcgaaaagcccgaggtttgggatgttttggacgaagtaataagggagcat
cccatattgctaaacagggctcctaccctgcacaggcttggtctccaggcgtttgacccc
gtacttatagaaggtaaggccatacagctgcatccgcttgtgtgtagtgcgtttaatgcg
gacttcgatggggaccaaatggcggtacacgtccctctgtcacttgaagcacagcttgaa
gccagggtgttgatgatgtccacaaacaacattcttagcccttcaaatggtaggccgata
atcgtcccgtccaaggatattgtcctgggaatatattacctcacgctgcaaagagcacaa
gcgcccgaccaggaggttatgtcttttggggaatttagccatgtggagtacgccctgcat
gaggggatagtacacacgtcttccaagataaaatacaggatgcagcgctgcaatagcgac
ggcacaatagtgagcgaggttgttgagacgaccccgggcaggctgattctctggcaaatt
tttccccagcacaaggatctcacgttcgatctcgtgaaccaggtgcttactgtgaaggag
attacatctatcgttgacttggtgtacaggagttgcgggcaaagggagacggtggagttt
tccgacaagctcatgtgtctgggttttcagtatgcgtcacagtctggtatctcttttggc
tgtaaagacatgataattccagacaccaaagcggcgcatgtggaaaatgcgagtgagaaa
attaaggagttttctatccaatatcaagacgggttgattacgaggagtgagcgctacaac
aaggtagtggatgagtggtctaagtgcacagacttaattgcccgggacatgatgaaagca
atctctttgtccgatgaggaagggaagctgaattccatttatatgatggcgaattccggt
gccaggggttcctcatctcagatgaagcagctggccggcatgcgtgggcttatggccaag
ccctcgggcgaaattatcgaaacccctatcatctcgaacttccgtgaggggttgagcgtg
tttgagtattttaattctacacacggggcgcgcaaggggctggctgacaccgcgttgaaa
accgcaaactccggatacctgacccgtaggcttgtggacgtggcgcaagactgtacagtt
gttgagtatgactgtaaaaccaaggatggcgtcgtcgccagggcggtgattgagggtggt
gccgtcgtagcgacgcttgacagtgtagtgctaggtagggttgctgcagtagacacttac
aaccctgtgactgaggaattgctattaagtgctggtgagctgatagacgaagggaaggtc
gagaaaataagagttgctgggttagatgcggtgagagtgcggtccccgctgacatgtgaa
tccaagaaagggatttgctcgttgtgctatggtagagaccttgctgttggggatttggta
tcgataggtgaggctgttggtgtaatagctgcgcagtctgtgggtgagcctggtacacag
ctgaccatgcgtacgttccacgttggtggtaccgcaatgcgcggggtggaggtatctaac
cttatagctgtgctggatgccgaggtgaaattggtgaacagcaacgtggtgaccgacaag
tacggcaatcagatagtgatgagtcggtcatgtgaggtagtgcttctcgacagcgttggt
aatgaaaagatgcggcacagcgtaccatacggtgcgaagctctatgtttcagatgggcag
ccggtcaaaatgatggacaaaatggccgagtgggacccatacactatacccattattacc
gagaagacgggaaccataaagtatgttgacctcatctacggtgtgtccatcaacgaagtt
ttggatgagtctacaggtatatcaaacagggttgttatagactggaagttgcatctccag
ggggcgaacttgaggccgaggttggtgctgttggatgaagatggcaacattgctacctta
tacaatgatctggaggcgagttacttcgtgcctataggcgcggtgctgaacgtccaagat
gggcagaaagtgcacgcgggggacgtcataactaggattcctagagaatccatcaagacc
agagacattaccggggggctgcccagagttattgagctgtttgaggcgcgccgtcccaag
gaacacgctattgtaagcgacgttgacggctacgttgagtttggcaaggattactatcgc
tccaagcgccggatattcatacggcctgtagacaaaagccttcctgcggtagaatatttg
gtgcccaagggtaagcacaccatagtgaacgagggtgactttgtgcacaagggtgatctg
ctcatggatggggatccggaccagcatgacatactcagagttttgggggcggaggctctg
gccagctacatgatttctgaaatacaacaggtatacagactgcaaggtgttaggatagac
aacaagcacatcgaggttatcctcaggcagatgctgcaaaaggtggaaatcactgatccg
ggtgacacaatgtacctggtgggtgagcatgctgggcgcgaggaggttatgcggctcaac
cgcaaactggaagaggctgggaagaagcctgttgcatatgtgccgattctccagggtatt
actaaagcgagtcttgataccaactccttcatttctgcggcgtcgttccaggaaaccacc
aaggtcctgaccgaagccgccttttcaggtaaggaagatcctctgtacggattgaaggag
aatgtaatcgttggtaggctaatacctgcgggtacagggttcattatgaacaaagtgaaa
aagctggcaatgctcgatcaaagcgactatgcaacttactataatagcgaattgcgagag
atcatgggtgacctgggtgacgaattaattgcggaaggtgaggcagcctccccgggccgc
agcggtgatggctatctggggaatggcgggggagttgtagattactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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