KEGG   Alkaliphilus metalliredigens: Amet_4127
Entry
Amet_4127         CDS       T00551                                 
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
amt  Alkaliphilus metalliredigens
Pathway
amt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:amt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Amet_4127
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:amt03400]
    Amet_4127
DNA repair and recombination proteins [BR:amt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Amet_4127
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Amet_4127
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD P-loop_SecA Microtub_bd AAA_22 AAA_30 HEM4 SWI2_SNF2 DUF87 Ribosomal_S20p
Other DBs
NCBI-ProteinID: ABR50208
UniProt: A6TVJ0
Position
complement(4224617..4226611)
AA seq 664 aa
MNGFEIQSDYQPTGDQPKAIEALSQGIKEGLRDQVLLGVTGSGKTFTMANIIQDVQKPTL
IIAHNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVVQSDTYIEKDASINDEIDK
LRHSATSALLERRDVIIVASVSCIYGLGDPAEYKKLVVSLRTGMTKDRDQVLRQLVDIQY
LRNDINFIRGTFRVRGDIVEIFPASSSENAIRVEFFGDEIDRITEINSLTGEIVGLRNHI
SIFPASHYATSADKIENAIESIEQELIEQVAFFKQEEKLIEAQRIQQRTMYDIEMLREVG
FCQGIENYSRQLTGRKAGSRPFTLIDYFPDDYLIIVDESHATIPQVGGMYAGDRSRKESL
INHGFRLPSALDNRPLNFKEFEKLVNQILYVSATPGPYELERNQRIEEQIIRPTGLLDPV
VEVRPIEGQIDNLVGEIHKRIEKKQRVLVTTLTKKMSEDLTNYLKEIDIKVRYLHSDILT
MERMEIIRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSATALIQTTGRA
ARNVEGRVIMYANRITKSMQKAIDETERRRLIQIEYNDKHQITPKTIVKKVRNVIEATKV
AEEKEKYGLNKEIEALTPEEVEELIQRLQIEMMQAADELQFERAAELRDQVKKLKKVYFN
EEEV
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgaatggatttgaaattcaatcagactatcaacccacgggagatcaaccaaaggccatt
gaagcattaagccaaggaattaaagaaggccttagggatcaagtactgctaggtgtaacg
ggatcaggaaaaacctttacaatggccaatattatccaagatgtacaaaaaccaacatta
attattgctcataataaaaccctggcagcacagctctgtagtgagtttaaagagtttttc
ccaaataatgcagtagagtattttgtgagttattatgattattatcaaccagaggcctat
gtcgttcaaagtgacacctatattgagaaagatgcttccattaatgatgaaatagacaag
ctgaggcattctgctacttcagcccttttagaacgacgggatgtcattattgtggccagt
gtgtcctgtatatatggattaggagatcctgctgaatataagaaattagttgtgtcctta
agaactgggatgactaaagatagggaccaggtgttacgacagctagttgatatacaatac
ttgcgaaatgatattaattttattaggggaacttttcgtgtcaggggagatatcgtagaa
atatttcctgcctcttcttcggagaatgcaatccgagtggagttttttggtgatgaaatt
gataggattacagaaattaattcactaacgggagaaatagtgggactcagaaaccatata
tcaatctttccggcatctcattatgccaccagtgcagataagattgaaaatgccattgaa
agtattgagcaagagctcatagagcaggtagccttttttaaacaagaagaaaagttgatt
gaagcccagcgaattcaacagcgaaccatgtatgatattgagatgctaagagaagtgggt
ttctgtcaagggattgaaaactactcaagacagttaaccggtagaaaagcagggagtagg
ccctttacactgatcgactattttccagatgactacttaattattgtggatgagtcccat
gccacaattccacaggtagggggaatgtatgcaggggaccgctcacggaaggaatcattg
attaatcatggatttagacttccttcggctctagacaatagaccactgaatttcaaggaa
tttgaaaagcttgtgaatcaaattctatatgtcagtgccacaccaggtccttacgaatta
gaaagaaatcaaagaattgaagagcaaatcattcggccaacaggtcttttagatcccgtg
gtagaagtgagacccatagaggggcaaattgacaatttagtaggagaaatacacaaacga
atcgaaaaaaaacagcgggtattggtgacgacattaactaaaaagatgtctgaggattta
actaactatttaaaggaaattgatattaaggtgagatacctacattcagatattctgacc
atggaaagaatggaaatcattcgagatttaagactgggggtatttgatgtattggtggga
atcaatctactcagagaaggcctagatttacctgaggtctctttggtagctattttagat
gccgataaggaaggctttctgcgttctgcaactgcattgatccaaacaacgggacgggcc
gcaagaaatgtagaaggccgggtgattatgtatgccaatcggatcaccaaatccatgcag
aaggcaattgatgaaacggaacgacgtagattaattcaaatagaatacaatgacaaacat
caaatcacaccaaagaccattgtgaaaaaggtaagaaatgtaattgaagccacaaaggta
gctgaagagaaagagaaatatggcttgaataaagagatagaagcattaaccccagaagaa
gtagaagagttgattcaaagactccaaatagaaatgatgcaggcggctgacgaattacag
tttgagcgagctgctgaactaagagatcaagtgaaaaaattgaagaaagtgtactttaac
gaagaagaggtgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system