KEGG   Amycolatopsis mediterranei RB: B737_2150
Entry
B737_2150         CDS       T02804                                 
Symbol
pdhD
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
amz  Amycolatopsis mediterranei RB
Pathway
amz00010  Glycolysis / Gluconeogenesis
amz00020  Citrate cycle (TCA cycle)
amz00260  Glycine, serine and threonine metabolism
amz00280  Valine, leucine and isoleucine degradation
amz00310  Lysine degradation
amz00380  Tryptophan metabolism
amz00620  Pyruvate metabolism
amz00630  Glyoxylate and dicarboxylate metabolism
amz00640  Propanoate metabolism
amz00785  Lipoic acid metabolism
amz01100  Metabolic pathways
amz01110  Biosynthesis of secondary metabolites
amz01120  Microbial metabolism in diverse environments
amz01200  Carbon metabolism
amz01210  2-Oxocarboxylic acid metabolism
amz01240  Biosynthesis of cofactors
Module
amz_M00009  Citrate cycle (TCA cycle, Krebs cycle)
amz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
amz_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
amz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
amz_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:amz00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    B737_2150 (pdhD)
   00020 Citrate cycle (TCA cycle)
    B737_2150 (pdhD)
   00620 Pyruvate metabolism
    B737_2150 (pdhD)
   00630 Glyoxylate and dicarboxylate metabolism
    B737_2150 (pdhD)
   00640 Propanoate metabolism
    B737_2150 (pdhD)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    B737_2150 (pdhD)
   00280 Valine, leucine and isoleucine degradation
    B737_2150 (pdhD)
   00310 Lysine degradation
    B737_2150 (pdhD)
   00380 Tryptophan metabolism
    B737_2150 (pdhD)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    B737_2150 (pdhD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:amz04147]
    B737_2150 (pdhD)
Enzymes [BR:amz01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     B737_2150 (pdhD)
Exosome [BR:amz04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   B737_2150 (pdhD)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 GIDA DAO AlaDh_PNT_C HI0933_like FAD_oxidored NAD_binding_8 FAD_binding_2 3HCDH_N Thi4 2-Hacid_dh_C Lycopene_cycl FAD_binding_3 Amino_oxidase Trp_halogenase
Other DBs
NCBI-ProteinID: AGT82814
Position
complement(2333404..2334777)
AA seq 457 aa
MTDTSADLVILGGGSGGYAAAFRAAELGLSVTLIEKDKLGGTCLHRGCIPTKALLHAAEV
ADETREAEAVGVKAVFEGIDIAGVNKYKDGIVARLYKGLQGLAKAHKVNLVEGSGTFVGG
TTVEVDGTRYTGKNVILATGSYSRTLPGLELGGRIIASEQALSLDYVPKKVVVLGGGVIG
VEFASVWASFGVDVTIVEALPRLVPNEDEFASKQLERAFRRRKIAFKTGVKFTGAKQDDN
GVSVSLESGETIEADLLLVAVGRGPNSAGHGYEEAGVKIERGFVLTDERLRTNLPGVYAV
GDIVPGLQLAHRGFQQGIFVAEEIAGQNPRVIDESGIPRVTYSHPEVASVGLTESQAKDK
YGSDVTTFTYDLGGNGKSQILKTSGGVKLVKAPDGPVVGVHMVGDRVGELIGEAQLIYSW
EAFPEDVAPLIHAHPTQTEALGEAFLALAGKPLHVHS
NT seq 1374 nt   +upstreamnt  +downstreamnt
gtgaccgacacctccgccgacctcgtgatcctgggaggcggatcgggcggctacgccgcg
gcgttccgcgcggccgagctgggcctttccgtcacgctgatcgagaaggacaagctgggc
gggacgtgcctccaccggggctgcatcccgaccaaggccctgctccacgccgccgaggtc
gccgacgagacccgggaagccgaagcggtcggcgtcaaggccgtcttcgagggcatcgac
atcgccggggtcaacaagtacaaggacgggatcgtcgcccgcctgtacaagggcctgcag
ggcctggccaaggcgcacaaggtgaacctcgtcgagggcagcggcacgttcgtcggcggc
acgaccgtcgaggtggacggcacccgctacaccggcaagaacgtcatcctcgccaccggc
tcgtactcgcgcacgctgcccggcctggagctcggcgggcgcatcatcgccagcgagcag
gccctgtccctcgactacgtgcccaagaaggtcgtggtcctcggcggcggcgtcatcggc
gtcgagttcgccagcgtgtgggcctccttcggcgtcgacgtcaccatcgtcgaggccctg
ccgcggctggtcccgaacgaggacgagttcgcgtccaagcagctcgagcgcgccttccgc
cgccgcaagatcgccttcaagaccggggtgaagttcaccggcgcgaagcaggacgacaac
ggcgtgagcgtttcgctggagtccggcgagaccatcgaggccgacctgctgctggtcgcc
gtcggccgcgggccgaactcggccggccacggctacgaggaggccggcgtcaagatcgag
cgcggtttcgtcctcaccgacgagcggctgcgcacgaacctgccaggagtctacgccgtc
ggcgacatcgtccccggcctgcagctcgcgcaccgcggcttccagcagggcatcttcgtc
gccgaggagatcgccgggcagaacccgcgcgtgatcgacgagagcggcatcccgcgggtc
acctactcgcacccggaggtcgcgtcggtcgggctgaccgagtcgcaggcgaaggacaag
tacggctccgacgtcacgacgttcacctacgacctcggcggcaacggcaagagccagatc
ctcaagacctccggcggggtcaagctggtcaaggccccggacggcccggtcgtcggcgtg
cacatggtcggcgaccgcgtcggcgagctgatcggtgaagcgcagttgatctacagctgg
gaggctttccccgaagacgtcgcaccgctcatccacgcgcaccccacccagaccgaggcc
ctcggtgaagcgttcctcgccctcgcggggaagccgctgcacgtgcacagctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (23)   
   KEGG PATHWAY (16)   
   KEGG MODULE (7)   
Chemical substance (27)   
   KEGG COMPOUND (27)   
Chemical reaction (11)   
   KEGG ENZYME (1)   
   KEGG REACTION (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (18)   
   Pfam (18)   
All databases (86)   

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