KEGG   Alkaliphilus oremlandii: Clos_0979
Entry
Clos_0979         CDS       T00607                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
aoe  Alkaliphilus oremlandii
Pathway
aoe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aoe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Clos_0979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aoe03019]
    Clos_0979
   03400 DNA repair and recombination proteins [BR:aoe03400]
    Clos_0979
Enzymes [BR:aoe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Clos_0979
Messenger RNA biogenesis [BR:aoe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Clos_0979
DNA repair and recombination proteins [BR:aoe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Clos_0979
SSDB
Motif
Pfam: RQC DEAD HTH_40 Helicase_C HRDC RecQ_Zn_bind ResIII GerE Helicase_Sgs1 Sigma70_r4_2 Orbi_VP4 UPF0561 HTH_38
Other DBs
NCBI-ProteinID: ABW18526
UniProt: A8MFY8
Position
1073601..1075838
AA seq 745 aa
MNKAIEVLKKYYGYDNFRDGQDEIIDHILSGRDVLTIMPTGGGKSLCYQIPAMIMDGTAI
VVSPLISLMKDQVDTLQQMGIPAAFINSSLAFSESQRIFEEAKRGEYKLLYVAPERLESE
GFTELIRSIKISMVAVDEAHCVSRWGHDFRPSYLRIKNLRSLSEDHPVLAAFTATATSEV
KEDIIDLIGLEGPYEITTGFDRENLKFEVVRVKEKLSYILKYVSEHKGKAGIIYCLTRKL
TEQVCSELVRAGFNAIQYHAGLGDVQRSKNQDDFLFDNAEIMVATNAFGMGIDKLDIRYV
IHYNMPQNIEAYYQEAGRAGRDGEPSECILLFSPQDIVMNNFLIDNGTTDGIGRTKEYDK
LQDMISYCNTDKCLRKYLINYFDSDYDREECNNCGNCLNEIESRDITIEAQKILSCIYRM
GGKFGSNLVIDVLRGSNGQRIRSLNFHKLSTYGIMKDCSKDFLREIISYMIAEGYIHVSR
DQYPVLSISPDGAMVLKGKQQVTIRKVLSEKRKFAETTNTHTEYNRNLFEELRALRKGIA
DQLRLPPFVVFSDATLKEMCVQFPQTKVEFLQIKGVGEVKAEKYSAPFAEAIQNYVEKNN
LNLQELKSEKTDQDTEIDRSDKENVEKQPKEPTREISYRMYREGKSIPEIAKARELKETT
VESHIENCARLGYEINYRDFISEEIEALIIHTYRKKRGAKLKEMKDSLPDEITYTEIRFA
LCKFQLEESESPKAQYEGDKTLHQL
NT seq 2238 nt   +upstreamnt  +downstreamnt
ttgaataaagccattgaagttttaaaaaaatattatgggtatgataattttagagacggg
caggatgaaattatagatcatattttatctggaagagatgttctaacaataatgcctaca
ggtggcggtaagtccctgtgctatcaaatacctgctatgatcatggatggtacggcaatc
gttgtttcacctcttatttctctgatgaaggatcaagtagatacattacagcaaatgggc
ataccagcagcttttattaatagttcacttgctttttcagagagtcagagaatattcgaa
gaagccaaaagaggggaatataagcttctctatgtggcgcctgaaagattggaatcggaa
ggcttcacggagctcataagaagtattaaaatttctatggttgctgtagatgaagcccat
tgcgtatcacggtggggacacgattttagaccgagctatcttcgcattaaaaatctaaga
agtttatcggaagatcatcctgtacttgcggcattcactgccacagcaacatcggaagtt
aaagaagatatcatcgatttaatcggtcttgaaggtccgtatgaaatcaccactggattc
gaccgggaaaatctaaaatttgaagttgtaagggtaaaagagaagctctcatatattttg
aaatatgtaagtgagcataaggggaaagctggcattatctattgcttgacaagaaagcta
acagagcaggtatgctccgagcttgttcgtgctggcttcaatgccattcagtaccatgct
ggattaggagatgtacaaagaagcaaaaaccaagatgattttctttttgataatgctgaa
attatggtagcgaccaatgcctttggcatgggcatcgacaaactagatattagatatgta
attcactacaatatgccacaaaatatagaagcctactatcaagaggctggaagagctggg
cgtgacggcgagccttcggagtgtattttgctgttcagtcctcaagatattgtaatgaat
aattttttaatcgacaacggtactacagatggtataggaaggaccaaggaatacgacaag
ctgcaggatatgatcagctattgcaacacagataaatgtttgagaaaatatctgatcaat
tactttgattctgattacgacagggaagaatgtaataactgtggcaattgtctcaatgaa
atagaaagtagagatatcaccatagaggcacagaaaatattatcctgcatctatcgaatg
ggtggaaaatttggcagtaatcttgtaatcgatgtgctaaggggcagcaatggtcagaga
ataagatctttaaattttcacaagctaagtacatatggcattatgaaggattgcagtaaa
gattttttacgagagattatttcctatatgatagcagagggctatattcatgtaagcaga
gatcaataccctgttcttagtatatctcctgatggtgccatggttttaaaggggaaacag
caggttacaataagaaaggtattgtctgaaaaacgaaaatttgcagaaacaacgaatacc
catactgaatacaatagaaatctctttgaggagctcagggctttaagaaaaggaattgca
gatcagttgagattaccacctttcgtcgtattttccgatgcaaccttaaaggaaatgtgc
gttcaatttccacagacaaaagtggaatttctccaaataaagggtgtaggagaggtaaag
gcagaaaaatacagtgcgccttttgcagaagccatccaaaattatgtggagaaaaacaat
ctaaaccttcaagagctaaagtcagaaaagacagatcaagatactgaaattgatcgttct
gataaggaaaatgtagagaaacagcccaaggagcctacgcgagagatcagctatcgaatg
tatcgggaaggaaaaagcattccggagattgcaaaagctagagaattgaaggaaactact
gtagaatcccacattgaaaattgtgcaaggctgggctatgaaattaactatagagatttt
atatcggaagaaatagaagccctcatcatccatacctataggaaaaaaagaggagcaaag
ctgaaagagatgaaggacagtctaccagatgaaataacttatacagagatacgatttgca
ctgtgtaaattccagttggaagaaagcgaaagccctaaggcgcaatatgaaggagataaa
accttacaccaactgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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