KEGG   Asparagus officinalis (garden asparagus): 109821280
Entry
109821280         CDS       T05243                                 
Name
(RefSeq) polyadenylate-binding protein 2-like
  KO
K13126  polyadenylate-binding protein
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03015  mRNA surveillance pathway
aof03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    109821280
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109821280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aof03019]
    109821280
   03041 Spliceosome [BR:aof03041]
    109821280
Messenger RNA biogenesis [BR:aof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     109821280
   mRNA cycle factors
    Stress granule specific factors
     109821280
Spliceosome [BR:aof03041]
 Complex C
  Other components
   Complex C specific factors
    109821280
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 MARF1_RRM1 RRM_7 RRM_3 BRAP2 FliG_M
Other DBs
NCBI-GeneID: 109821280
NCBI-ProteinID: XP_020243055
Position
8:60245829..60262900
AA seq 683 aa
MRRAYLLCRSDFPSSRQPMPVKREMTQPASVSSAMLSITSRKIQRAYLPCRSDFPSSQQP
PPIDAMDEIEGIANEGITTTRRDSIHISEKKENRKKWLRFKEVVSVRVCRDITTRRSLGY
AYVNFTNPNDAARALDMLNFTPINNKAIRIMYSNRDPSTRTSAAANIFIKNLDKSIDNKA
LHDTFSAFGNVLSCKIATDASGQSKGYGYVQFDQEEAAQNAIDKLNGMALNDKVVYVGPF
LRKQERENTADNESKEKFSNVFVKNLSESTTEEDLSKVFAEFGQLTSTIVMKEDDGKSKC
FGFVNFLNPDDAARAVKELNGKKFDDKEWYVGKAQKKSERERELKGRFEQGMKELADKHQ
GVNLYLKNLDDSVGDDKLREMFSEFGMIASCKIMRDPNGISKGSAFVAFSTPEEASRALA
EMNGKMVGGKPLYVAHAQRKEDRKARLQAQFSQMGPGMAPVGVPRMPIFPPGAPPLGQQL
FYGQAPPALIPPQPGFGYQPSMVPGMRPAGGHMPNFFMPLVQQGGHQQPRPVGRRGGQGP
GQMMQQPMHFLPHQMLPSHGRGRSYGYPQGRNMQGGNFPSMPSHEREQQPLSALATALAN
ASPDQQRTMLGENLYPLVVQLEPDHAAKVTGMLLEMDQTEVLHLLESPESLKAKVAEAME
VLRNVAQQSPHGQMASLSLSDES
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgcgaagagcttatctcctatgccgaagtgacttcccctccagtcgccaaccgatgcct
gtaaagcgagagatgactcagcctgctagcgtgtcttctgccatgctctcaatcacttcc
cgaaaaatacagagagcttatctcccatgccgaagtgacttcccctccagtcagcagcca
ccacctatagatgctatggatgagatagaggggattgcaaatgaaggcataactaccacc
agaagagattcaatacatatatcggaaaaaaaggaaaacagaaaaaaatggctgcggttc
aaggaggtcgtctcggttcgcgtttgtcgagatatcaccactcgccgatctcttggttac
gcctacgtcaatttcaccaatcccaacgatgcggcaagggctttggatatgcttaacttc
acgcctatcaataataaggcaattcgtataatgtactcaaatcgtgatcccagtacacga
actagtgctgcagctaatatatttatcaagaatctggacaagagtattgataacaaggcg
ctccatgacacattctcggcgtttgggaatgttctttcatgtaagattgccacggatgca
tctgggcagtcgaaggggtatggttatgttcaatttgatcaggaggaggcagcacaaaat
gcaatagacaagctgaacggtatggctttaaatgataaggtggtttatgttggtcctttc
cttcgtaagcaggagagggaaaatacagcagataacgaaagcaaggagaagttttctaat
gtctttgtgaagaatctttcggagtccacaacagaggaagatttgtcaaaagtttttgcc
gagtttgggcagcttactagtacgatagtaatgaaggaggatgatgggaaatccaagtgc
tttggatttgttaattttctcaatcctgatgacgctgcacgagcagttaaggaacttaat
ggaaagaaatttgatgataaagagtggtatgttgggaaagcacagaagaagtctgaaaga
gagagggagctgaaagggagatttgagcaaggtatgaaagagttagctgacaaacatcaa
ggggttaacttgtatctgaagaatttggatgatagcgttggagatgataagctgagagag
atgttttctgagtttggcatgattgcgtcatgcaagattatgcgggatcctaatggtata
agcaaaggatctgcgtttgttgcattttcaacacctgaagaggcatctcgagctcttgct
gaaatgaatggaaaaatggttggtggaaagcctctatatgttgcccatgcacaacgaaaa
gaagacagaaaagctaggttgcaggcacagttttcacaaatgggacctggaatggcgcct
gttggagtgcctcgcatgcccattttccccccaggtgctcctcctcttggacaacagcta
ttctatggccaagcacctcccgctctgattcctccacagccaggatttggttatcagccg
tcaatggttcctgggatgaggcctgcagggggtcatatgccaaacttttttatgccatta
gttcagcaaggaggtcatcagcagccccgccctgtaggtcggcgtggcggacagggtcct
gggcaaatgatgcagcagcccatgcatttccttccgcatcagatgttgcctagccatggc
aggggacgttcatatggttacccacagggtcgcaacatgcagggtggcaatttcccctcc
atgcctagtcatgaaagggagcaacaacccctcagtgctctagctacagcgctcgcaaat
gcttctcctgaccagcagaggacgatgcttggtgaaaatctataccctcttgtggtgcag
ttagagcctgatcatgctgccaaagtgactggtatgctgctggagatggatcagaccgag
gtcttgcatttgctagagtctccagagtctttgaaggcgaaagtggccgaggccatggag
gtcctgagaaatgtcgctcagcaatcacctcacggtcaaatggcttcactgtcgctgagc
gatgaatcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (52)   

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