KEGG   Asparagus officinalis (garden asparagus): 109824557
Entry
109824557         CDS       T05243                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109824557
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aof03019]
    109824557
Enzymes [BR:aof01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     109824557
Messenger RNA biogenesis [BR:aof03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     109824557
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 109824557
NCBI-ProteinID: XP_020246771
Position
9:48584231..48595487
AA seq 606 aa
MEATIAAAQRQGYTSAVKQVMKTNFTSALEEIKAHINQSDFIAVSSQKTGDFFSSSSSWR
RVLPIDTPEVAYLKSKVSADNFQLFQFAVCPFSIQGSKVLASPYNFHLFPRDELGLGMPS
YSFSCQTSFLTSMAQEGFDFNACIYDGISYLSRVQESKAKERNPVPRMHPISSSFNPSVA
DSLFMGRIKSRIEHWRSACKNKDSVADGSLVKSLRKLILGDELYGSRPCMNIEVCSDRQV
QLTLEIVNKIGDDLVPLVVPEKCGAPKAVRVVLTSSDEDKILLMSDIENVEDEQNLKVRG
FREVIDLVSRSQKPIIAYNCLHDFTFIHSKFLAPLPPSLSEFMCSLRLVFPNILDVNHLC
KEVGPLRKAKNLPATLSYLKRQFFVPIEFEIPHQADVKTEKDHGHNVLRITTLFSKLYNL
LKLSSERQEPYEEQHRSIEDYTNIFHPTYTSFQESGDNENVILSMNKNRRKVSTDNIVFL
WGFGDRISASELKSHLKGIHPVFSEDFDLRLVDKACSVIVFWSSGAAQALLKVMESGEMI
SIDLKLAGYEAYKKVCKSGLWEAGLANSLEAALAETELECDLSASSAKDSSDIYWNSELM
IDLDNL
NT seq 1821 nt   +upstreamnt  +downstreamnt
atggaggccacgatcgccgcagctcaacggcaaggctacacctcagcagtgaagcaagtg
atgaagacgaacttcacctcggcgcttgaagagataaaggcccatatcaatcagtccgat
ttcatcgccgtctcctctcaaaaaactggcgatttcttctcttcttcatcttcatggcgg
cgcgtgcttcctattgatactcctgaagttgcgtatctcaagtctaaggtgtccgctgat
aatttccagcttttccagtttgcagtctgccctttttccattcaggggtctaaagtcctc
gcctccccctacaactttcatttatttccaagggatgagctaggtttgggcatgccttcc
tatagcttctcgtgccaaacttcattcctgacttccatggctcaagaaggttttgacttt
aatgcatgcatttatgatggaatatcatatttgtctagagtacaagaatcaaaagcaaaa
gagagaaatcctgttcctcgaatgcatccaatttcatcctcctttaatccatcggttgct
gattcgcttttcatgggaagaatcaagtcaagaattgagcactggagaagcgcctgcaaa
aacaaagacagtgttgctgatggttctcttgtaaaatctttgagaaaactaattttaggc
gatgaactctatggttcaagaccatgcatgaatatcgaggtctgcagtgatcgtcaagtg
cagttgacactagagatagttaacaagataggtgatgaccttgtgcctttagttgttcca
gagaaatgtggagcgcccaaggcagtacgtgtggtgctgactagttcagatgaggacaaa
attcttctcatgagtgatattgaaaatgttgaagatgagcagaacctaaaggttcgtggg
ttccgagaagtgatagacctggtttccagatctcagaaaccaatcattgcatacaactgt
ctgcatgattttacatttatccactcgaaattccttgctcccctgccaccaagcctgtcg
gaattcatgtgctctttgagattggtcttccctaatatactcgatgtgaaccatctatgc
aaagaagttgggcctttgagaaaagcaaagaatctgccagctactcttagttacttgaag
aggcagttctttgtgcccatagaatttgaaatccctcatcaagctgatgtgaaaactgag
aaagatcacggacacaatgtcctcagaattacaaccttattttccaagctctacaatttg
ctaaaattatcttctgagcgtcaagagccatatgaagagcagcataggtcaattgaagat
tacacaaatatctttcatcctacttacactagtttccaagagtctggggacaatgagaat
gtcattctctcaatgaataaaaacaggaggaaagtgagcaccgataacatagttttcttg
tggggttttggcgatagaattagtgcttctgagttaaaatcccacctcaagggaatccat
cctgtgttctctgaagactttgacttgcgacttgtagataaagcatgttcagttattgtt
ttttggagctcaggtgctgctcaagctttactcaaagtgatggaatcaggagaaatgatc
tccattgatctaaaattagcaggatacgaagcttacaagaaagtttgcaagtcggggctt
tgggaggcaggcttggccaattctttggaggctgccttggctgagactgaacttgagtgt
gatctttctgcatcttctgccaaggattcctcggatatctattggaacagtgaactgatg
attgatcttgataatctttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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