KEGG   Asparagus officinalis (garden asparagus): 109837963
Entry
109837963         CDS       T05243                                 
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03030  DNA replication
aof03410  Base excision repair
aof03420  Nucleotide excision repair
aof03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109837963
   03410 Base excision repair
    109837963
   03420 Nucleotide excision repair
    109837963
   03430 Mismatch repair
    109837963
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aof03032]
    109837963
   03036 Chromosome and associated proteins [BR:aof03036]
    109837963
   03400 DNA repair and recombination proteins [BR:aof03400]
    109837963
DNA replication proteins [BR:aof03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    109837963
  DNA Replication Termination Factors
   ELG1-RFC complex
    109837963
Chromosome and associated proteins [BR:aof03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    109837963
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     109837963
  Check point factors
   HRAD17(Rad24)-RFC complex
    109837963
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RuvB_N AAA_22 Rad17 AAA_24 AAA_11 Mg_chelatase AAA_assoc_2 PhoH AAA_5 AAA_16 DNA_pol3_delta ResIII nSTAND3 AAA_18 AAA_19 AAA_2 SLFN-g3_helicase AAA_14 bpMoxR RNA_helicase AAA_25 AAA_28 TIP49_C FixS AAA_30 DNA_pol3_gamma3 IstB_IS21 Parvo_NS1 AAA_7 AAA_3 Ribophorin_II TIP49 Effector_1 DUF815 GpA_ATPase NB-ARC DUF3853
Other DBs
NCBI-GeneID: 109837963
NCBI-ProteinID: XP_020261945
Position
4:complement(111088702..111099561)
AA seq 342 aa
MAPLVPSSQPWVEKYRPKQVKDVASQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLFGXFKKPXFLSTRVSNASDDRGINVVRTKIKDFAAVAVGTGTRPGYPCPPYKII
ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKSLSEEIM
YNRILHICKEEGLNLDSEALSTLSSISEGDLRRAITYLQSAARLFGSSISAKDLISVSGV
IPQDAVQALFAACKSGQFDQANKEVNNIISEGYPVSQMLNQLFEVVVNADDISDEQKARI
CKRLGEADKCLVDGADEYLQLLDVASNTMKALSNMPEELKFD
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgcctctggttccaagctctcagccatgggtcgagaaataccgaccgaagcaggtg
aaggatgtggcgtcgcaggaggaggtcgtccgcgttctcaccaacacgctcgagactgcc
aattgccctcacatgttgttctatggtccgccgggaacaggaaagaccaccacagccctc
gccatcgcccatcaactgttcgggtaatttaaaaagccctaatttttaagcactagagtt
tctaacgcaagtgatgatcgaggcatcaatgttgtgcggactaagattaaggattttgcc
gctgttgcagttggtactgggactcgtccaggatatccttgcccgccgtacaaaatcata
atattagatgaggctgattcgatgactgaagatgctcagaatgccttgagacgaactatg
gaaacttactctaaagtcacaagattcttcttcatttgcaattacattagcaggatcata
gagccacttgcctccagatgtgcaaagtttcgcttcaagtctctttctgaagaaattatg
tacaaccgcattttgcacatttgtaaagaagagggcctcaatcttgactcagaggcttta
tccacattgagctccatttctgagggagatcttcgtcgtgctataacatacctgcagagt
gctgctcgcttgttcgggtcctccatttcagccaaggacctaattagtgtttctggggtt
attcctcaagatgctgttcaggctctctttgcagcttgtaaaagtggtcaattcgaccaa
gcaaataaagaagtcaataatataatatcagaaggatatccagtttctcaaatgctcaat
cagttgttcgaagtggtagtgaatgcagatgatatatcagatgaacagaaagccagaatt
tgcaagagattgggcgaagcggacaagtgtctggttgatggcgccgatgaatatctgcag
ctattggatgttgccagtaatacgatgaaagccctctctaacatgccagaagagttgaaa
tttgattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (40)   
   Pfam (40)   
All databases (75)   

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