KEGG   Asparagus officinalis (garden asparagus): 109842835
Entry
109842835         CDS       T05243                                 
Name
(RefSeq) uncharacterized protein LOC109842835 isoform X1
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109842835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:aof03000]
    109842835
   03019 Messenger RNA biogenesis [BR:aof03019]
    109842835
   04121 Ubiquitin system [BR:aof04121]
    109842835
Enzymes [BR:aof01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109842835
Transcription factors [BR:aof03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    109842835
Messenger RNA biogenesis [BR:aof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109842835
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     109842835
Ubiquitin system [BR:aof04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109842835
SSDB
Motif
Pfam: zf-RING_4 Baculo_IE-1 RRM_1 zf-UDP
Other DBs
NCBI-GeneID: 109842835
NCBI-ProteinID: XP_020267325
Position
5:10314731..10330170
AA seq 1130 aa
MTTMSDDGDRTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAEKEGSDGRCPACR
TTYDKQRIVGMSANCKRMVAEISAEKKQKPQKAKNKSSSAIEDRKHLSSVRVVQRNLVYI
MGMPSNLADESVLERKEYFGQYGKVLKVSVSRQAGTTPQQVASNNTFNVYITYAREEEAV
RCIQATHNFVLEGKPLRACFGTTKYCYTWLRNMTCSNPDCLYLHDIGSHEDSFTKDEIIS
AYTRSRVPQIPSTILLPRAGNVLPPPIDDLYSNGAFSTRPSTKPFNSTANQVKSAPIDIS
GTRSTVLPAAASWGLRASNSRSPSSNIASSQNPLSQKIEVLNNSSSSSMLLSTKQNSAWN
DNSVIASKIPEGRHAVHINGRYSVSEPLKHGSERDHLIKVVDESSGTTLDVDHSSDSAWD
DDITTVKLPDGKHTMHTTGRFRNTITVRCTNAAFVSDTPEVILDEPRHSAWDDDTDLTLN
MTEERQIVDNDDRFRSTGTQEPSIAVFRASTTDVTSETFPDVVHTSGVSISCSSGQCSPQ
HENHDTGGTASLPSSYSENTTYSKDCSYELSRSCADKLSHVSADNGNIESLSLGLSSVNL
DTCPGIDHINAGQQQSSVSDDRFVGKFGHLNSRQHQHQHHPENGVESLSTASVFPNVQAT
GNLSDWRTDQQKQALSSSGNGLVDALAASADQRHGLSELTNLPSCSPSVPNHLISSSHNC
SVGDGLFSVGDSRTMGRRVNSESLFCNGNKDQMSSNFVKIDGANDPDGSYIGKELGSSDF
GKISNMERSTTVNTEEENIVSKILSLDFDPWDNSWSSANDFAKLLARMNKQEGPAKQSQS
ANQSRFSFARQENQANIANSSYRDMGFAHQQVSSKQEAYGNCFGNDYPVSSFGPANSLGN
SSSTISSDTNAGVTKLKISAPPGFSVPNRAPPPGFSSQDRYDQTINTFSESQLIGSPLQD
QFQAHSTNNAVDVEFIDPAILAVGKGRLPLGINNAGIGSRSSYHQQFTTSESDARIQLLM
QQSISASHGPRIPNHISDRFVPHDDAYTASRFSAQNPSLSPFSQISHQQPSCLLNNQWNG
WNDMQIGNGIGIPEVLRGERFGVGNYFPINEEPKFHLPSSGDIYNRAFGI
NT seq 3393 nt   +upstreamnt  +downstreamnt
atgacgaccatgagtgatgatggagataggacctgccctttatgtgcggaagagatggac
cttactgaccaacaattgaagccatgcaaatgtggatatgagatatgtgtatggtgttgg
catcatataatggaaatggctgaaaaagaaggatcagatgggcgatgtccagcatgtcgc
acaacatatgataagcaaagaattgttggaatgtctgccaactgtaaaaggatggtggct
gaaataagtgcagagaaaaagcagaagccccaaaaggcaaagaataaatcttcatcagcc
atagaggataggaagcatcttagtagtgtccgtgtggtgcagagaaatcttgtatacata
atgggaatgccttctaatttagctgatgaaagcgttcttgagcgtaaagaatactttggc
cagtatgggaaagttttaaaggtttcagtttcacgccaggctgggacaactcctcagcaa
gtggctagtaataacacatttaacgtgtacataacttatgctagagaggaggaggctgtt
cgatgtattcaagctactcacaactttgttttagaaggtaaacctttgagagcatgtttt
ggcactacaaagtattgctacacatggttgagaaatatgacctgcagcaatccggattgt
ttatatttgcacgatataggtagccatgaggacagcttcactaaagatgagattatatca
gcttacaccaggagtcgggttccacaaatcccgtcaactattttgttgccacgtgctgga
aatgtcttgccacctccaatagatgatttatactctaatggggcattttctactagaccg
tctacaaagcccttcaatagtaccgcaaaccaggttaagagcgctcctattgacataagt
ggtactaggtctactgttctgccggcagctgcttcatggggattgcgtgcttcaaatagt
cggtcaccgtcttcaaatattgcaagctcccaaaacccgcttagccagaagatagaagtc
cttaataattcatctagttcttcaatgcttttgagcacaaaacaaaattctgcatggaat
gacaattcagttattgcttcaaaaatacctgaagggaggcatgcggtccacataaatggt
agatatagtgtctcggaacccttaaaacatggcagtgagagggatcatctaataaaagta
gttgatgaatcatcggggaccactctggatgttgaccatagttctgattctgcatgggat
gatgacataacgacagtgaagttacctgatggaaaacatacaatgcatactactggcaga
tttaggaacacaataactgtgagatgcactaatgcagcatttgtttccgacacaccagaa
gtcatcttggatgaacctcgtcattctgcatgggatgatgacacagatttgacattaaac
atgacggaagaaaggcagattgtagacaatgatgacagatttaggtctacagggactcag
gagcccagtattgcagtctttagagcgtccactacagatgtgacatcagagactttcccg
gatgtagttcatacttctggagtttccattagttgctcatctggccagtgttccccgcaa
catgaaaaccatgacacaggcggtactgcatctttaccgagttcatactcagaaaatacc
acttattctaaagattgttcatatgaattgagtaggtcttgtgctgataagcttagtcat
gttagtgccgacaatggaaatatagagagtctaagtttggggttatcttcagtaaatttg
gatacttgtcctggcattgatcatatcaatgctggtcagcagcagagttcagtttctgat
gatcgctttgttggaaaatttggacacttaaattcgagacagcatcagcatcagcatcat
cctgaaaatggggtagaatctctaagtactgcttccgtatttcctaatgtacaagcaaca
ggaaatttatctgattggagaacggatcagcagaagcaagctttatcatcatctggcaat
ggacttgtggatgctttagccgctagtgctgatcagagacatgggctttctgagcttact
aatttaccatcttgctctccaagtgtcccaaatcatctaatcagcagttctcacaattgc
agtgtaggtgatggattgttttctgttggagattctagaactatggggcgcagagtgaat
agcgaatctttattttgtaatggaaacaaggatcagatgtcaagcaattttgttaaaatt
gacggagcaaatgaccctgatggcagctatattggtaaagagttgggctcgagtgatttt
ggtaaaatatcaaatatggagagaagtacaactgtaaatacagaagaggaaaacattgtg
tcgaaaattttgtcattggacttcgatccatgggataactcatggtcctccgctaatgat
tttgctaaacttcttgccagaatgaataaacaggaggggcctgcaaaacagtcgcaaagc
gctaaccaatctaggttttcatttgcaaggcaggaaaatcaagcaaacattgcgaacagt
tcttatagggacatggggtttgcacatcaacaagtctcctcaaagcaagaagcttatgga
aattgctttggaaatgattaccctgtcagtagcttcgggcctgccaattcgcttgggaac
agcagctcaacaatctcttctgatactaatgcaggtgtcacaaaacttaaaatatctgca
ccacctggattttctgttcctaatagagcaccacctccggggttttcctctcaagacaga
tatgaccagactatcaatacattctcagagtcgcaattaattggcagtccacttcaagat
cagtttcaagctcattctaccaacaatgctgttgatgtagaatttattgatccagcaatt
cttgctgtgggcaaaggaaggctacccctcggaataaacaatgcaggcataggctcgagg
tcttcttatcaccaacaatttaccacttcagagagtgatgctagaatccagttattgatg
caacaatctatttctgctagtcacggcccaagaattccaaatcatattagcgatagattc
gtaccacatgatgatgcttatacagcttctagattttcagcacaaaatcccagtttatct
ccattttcacagatatcacaccagcagccctcatgccttttaaataaccagtggaatggt
tggaatgacatgcagattggtaatgggattgggatccctgaggttctaaggggtgagaga
tttggagttggaaactattttcccattaacgaggaacccaaattccacctgccaagctct
ggtgacatctataacagagcatttggaatttaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (44)   

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