KEGG   Asparagus officinalis (garden asparagus): 109842914
Entry
109842914         CDS       T05243                                 
Name
(RefSeq) transcription factor bHLH140 isoform X1
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109842914
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aof03400]
    109842914
Enzymes [BR:aof01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     109842914
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     109842914
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     109842914
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     109842914
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     109842914
SSDB
Motif
Pfam: DcpS_C AAA_33 zf-C2HE HIT Macro AAA_18 CPT Zeta_toxin AAA_17 AAA_16 Viral_helicase1 AAA_25 AAA_29 nSTAND3 RsgA_GTPase AAA_22 NTPase_1 AAA_28 AAA
Other DBs
NCBI-GeneID: 109842914
NCBI-ProteinID: XP_020267419
Position
5:complement(12303066..12310833)
AA seq 716 aa
MDLDANPQHQDSEEKPKGIVVILSGAPGSGKSTFCNDVLSAGRRSWVRVCQDTIANGKAG
TKSQCLKSAAAALKEGKSVFIDRCNLEKEQRAEFVKLGDEQVDVHAVVLDLPAKVCISRS
VKRSGHEGNLQGGKAAAVVNRMLQKKELPKVSEGFSRITFCQNENDVRDAVKIYSNLGQN
DNLPAGNFGQKSPDAKVQLGIMKFLKKVENPKNASNGSQGSSPKQEIKDKDPCFMELENE
HENKEGIKLKDSLVDDIPILAFPSISTSDFQFDHGKASDVIVESVIEFLNKVDNVRLVLV
DISHKSHMLSLVKEKAEKKNIDPNKFSTLVGDITRLCTEGKLCCRVIANAANWRLKPGGG
GVNAAIFKAAGEDLEMATKERADTLSPGTSVAIPLPSTSPLYRREGVTHVIHVLGPNMNP
QRPNCLKNDYVKGCKVLRDAYASLFENFASITRDQRCNEVKSSDPRNDASKRSSVDNLHN
DQKNKRDGFHDSESNKKSKPDDNMVVYKDKQKNEKTAAKRTWGSWAQALHQMAMDPEKHK
DAVIEIFDEFVALNDLYPKAKKHILVVSRLPGLDSIADVQKEHLPLLKTMHDAGLKWAEK
FLKEDASLTFRLGYHSVPSMRQLHLHVISQDFDSPHLKNKKHWNSFNTLFFRDSTDVIEE
VEKSGEVTLNDENLLSVELRCHRCRSAHPNIPRLKFHISNCKASISSTQRLVFASS
NT seq 2151 nt   +upstreamnt  +downstreamnt
atggacctcgacgccaatccccagcaccaagattcagaggagaagcccaagggcatagtc
gtaattctcagcggagctccgggcagcggaaagtccacgttctgcaacgatgtcttgagc
gccggccgccgatcttgggttagggtttgtcaggacactattgcaaatgggaaggctggt
acaaaatcacagtgcttgaagagtgctgctgctgcattaaaggaaggcaaaagtgttttt
attgacagatgcaatttggagaaagaacaacgtgctgagtttgtgaagcttggtgatgaa
caagtagatgtgcacgcagtagtacttgatcttcctgctaaggtttgtatttctaggtca
gtgaagagatccgggcacgagggcaacctgcagggtgggaaagctgctgctgtggtcaat
agaatgctacaaaagaaagagttacctaaagtcagtgaaggattctcgaggattactttt
tgtcagaatgaaaatgatgttagagatgcggttaaaatatacagtaacttgggtcagaat
gataaccttccggctggaaattttggtcagaaaagccctgatgctaaagtgcagcttggg
ataatgaagtttcttaagaaagttgagaaccctaagaatgcatctaatggttcacaaggt
tcttccccaaaacaagaaattaaggacaaagacccctgtttcatggaacttgaaaatgag
catgagaataaggaaggtataaagctcaaagactcgttggtagatgatatacctattctg
gctttcccgtctatatcaacctcagatttccaatttgaccatggaaaggcgtctgatgtt
attgtggagagtgttattgagtttttgaacaaggttgataatgtcagacttgttctggta
gatataagccataagtcacatatgttatctttggttaaggagaaagctgagaagaaaaat
attgacccgaacaagttttccacacttgttggagacataactcggctttgtacagaagga
aaactatgctgcagagtcattgctaatgctgcaaactggcgattaaaacctggaggtgga
ggagttaatgcagctatattcaaagcagcaggtgaagatctggaaatggcaacgaaggaa
agggctgatactcttagccctgggacctctgttgccattcctcttccttctacttctcct
ctctatcgaagagaaggagttactcatgttatacatgttcttggaccaaatatgaaccca
cagagaccaaactgccttaaaaatgactatgtcaaaggttgcaaggtccttcgtgatgcc
tatgcctctctttttgaaaactttgcatccattacacgagaccaaagatgcaacgaggta
aagagcagtgatcctagaaatgatgccagtaagagaagcagtgtcgataatttgcacaat
gatcagaagaacaaacgagatggcttccatgactccgagagtaacaaaaaatcaaaacct
gatgataacatggtagtttataaagataagcagaagaatgagaaaactgctgcaaaaagg
acctggggttcatgggcacaagctcttcatcagatggccatggatcctgagaagcacaag
gatgctgtcattgagatattcgatgaatttgtagctttaaatgacctttatccaaaggca
aaaaaacacatcctcgtggtatcaagattgcctggtctcgattctatagcagatgttcag
aaggaacaccttccgttgttgaagacaatgcatgatgcaggtcttaagtgggcagagaag
ttcttaaaagaagatgcttctttaacttttagacttggatatcattcggtcccatcaatg
cgtcaactccaccttcatgttatcagccaagatttcgactcaccacaccttaagaacaag
aaacattggaattctttcaacacccttttctttcgtgattctacggacgttattgaggaa
gtcgaaaagtctggagaagtgactttgaacgatgagaacttgttgtctgtggaattgaga
tgccacaggtgcaggagtgcacatcctaacatccccaggctcaagtttcatatttctaat
tgcaaagcatctatttcgtctactcaacgactagtttttgcgtcctcataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (3)   
   KEGG ENZYME (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (19)   
   Pfam (19)   
All databases (49)   

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