KEGG   Anaplasma phagocytophilum HZ: APH_1024
Entry
APH_1024          CDS       T00327                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
aph  Anaplasma phagocytophilum HZ
Pathway
aph03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aph00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    APH_1024 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aph03021]
    APH_1024 (rpoB)
   03400 DNA repair and recombination proteins [BR:aph03400]
    APH_1024 (rpoB)
Enzymes [BR:aph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     APH_1024 (rpoB)
Transcription machinery [BR:aph03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     APH_1024 (rpoB)
DNA repair and recombination proteins [BR:aph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      APH_1024 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ABD43405
UniProt: Q2GJ68
Position
complement(1086938..1091089)
AA seq 1383 aa
MSSAGDSGPGYVLNDFDAVPRLSYARSIDIRDSLSDLIRIQRDSYDAFIGIDEGSSGGIQ
SIFQSMFPIRDPLGRAVLEFVSCNIGEPQYDEYECIKRGITFSVPMRITLRFVVWKVQEV
SFKEVKYVVDEGTLERSVKYMKEQEVSIGDLPMMTSYGTFIINGIERVIVSQMHRSPGVF
FDSDKGKTYSSGKLIYSARIIPYRGSWLDFEFDIKDIIYFRIDKKRKLPVTYLLKALGMS
NNDILDTFYDKVLYVRSDKGWKVPFVVDRFKGVRLSYDLMDVDGNVLIKANTRITLRIAK
KLYADGLREYLVPFAGISGLFVATDLVDPASGAVIVSAGEAIAAEHIVKLELFDISEIAF
LNIDFLTVGPYVLNTLFLDRHITQEDALFEIYRVLRSGESPNLEAVKSFFKGLFFEPDRY
DLSVVGRIKLNSHLRLDIDENLTVLTKDDIVHVIKKLVLLPDGEGVVDDIDHLGNRRVRS
VGEFIENQFRVGILRLERMIMDYMSSVNFDNAVPCDFVNPKILATVLKDFFSSSQLSQFM
DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLISSL
AIYAKINKYGFIESPYRKVIDGVVTDSVEYLLATQESDYYIADAGAALDENNRFVDDMLY
CRHGGNFVMVKREDVNYIDVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAVPLLKA
EAPLVGTGMESVVAAGSGAVVLAKRDGVVHRVDGSYIVIRAFDKNKDEYLGVDIYKLRKF
QRSNHNTCINQRPIVKIGDYVRTNDVIADGAAIDRGELALGKNVLVAFMSWQGYNFEDSI
VISSDVVKRDVFTSIHIEEFECVVRDTPLGPEKIMRSVPDVNEESLSHLDDVGIVNIGAE
VSAGSVLVGKVTPRPPVSLPPETKLLVTIFGEKVFDCVDSSLYLPPDVEGTVIDVHVFVR
RGVEENDRSLLIKQSEVNSFRKERDYEIDVVSEYFYDELKKLLCSADLPLNGHADVESLL
AAKSLEALWEIGLSNPKISAKVADMKGKFDELITEAHSKFDQKIDKLNYGYDLPQGVLTI
VKVFVAVKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSRMNI
GQILETHLGWAAVNLGHRVGRMLDSGEEEGPVVESIRSFLSEVYEGQKLKEDVASMSDEA
LLKFANRLRRGVPMAAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVG
YIYMLKLHHLVDDKIHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQ
EMLTVKSDDIVGRVRIYESIIKGDSNFECGIPESFNVMVKELRSLCLDVVLKQDKEFTSS
KVE
NT seq 4152 nt   +upstreamnt  +downstreamnt
atgtcttctgcgggtgattctggtcccgggtatgtgctgaatgattttgatgctgttcct
aggctttcttacgcgaggtctatagacattcgcgattctttgagtgatttgataagaata
cagagagattcttatgatgccttcatagggattgatgagggtagtagtggcggtatacaa
agcatattccagtcgatgtttcccatacgagatcctttggggagggctgtactcgagttc
gtgagttgtaatattggggagcctcaatatgatgaatacgagtgcataaaacgtgggata
acgttttctgtgccgatgcgcataactcttcgttttgttgtgtggaaggtgcaggaggtt
tcattcaaggaagttaagtacgtcgtagatgagggcactcttgagaggagtgttaagtac
atgaaggagcaggaggtgtctattggcgatcttccgatgatgacatcatatggaaccttc
atcatcaatggtatagagagggttattgtttcccagatgcatcggtctcctggtgtcttt
tttgacagtgataaggggaagacatacagttctgggaagctaatttattctgcgcgtatc
atcccttacaggggctcgtggcttgattttgaatttgacatcaaggacatcatttacttc
cgaatagataaaaagcgtaaactcccggtcacctacttattaaaggcccttgggatgtct
aacaatgatatcctagacacattttatgacaaagttctttacgtaagaagtgataagggt
tggaaggtaccctttgtagtggatcgctttaagggtgtgaggctgtcttatgatcttatg
gacgtagacggtaatgtgctgattaaggcgaatactaggattactctcaggattgctaaa
aagttatatgctgatggcttaagggaatatttggtgcctttcgcggggatttctgggttg
ttcgtggcaactgacttggtggatcctgctagtggtgctgtgattgtttctgcgggtgag
gcgatagctgcggagcacattgtaaaattagaattgtttgatatcagtgagatagcgttt
ttgaacatagactttttgacagttggtccttatgttctgaatactctatttttggacagg
catataacgcaagaggatgcgctgtttgagatatatagggtattgcgttctggagaatct
ccaaatttagaagctgtgaagtcattctttaaagggctcttttttgagccagataggtat
gatttgtcagttgttggaagaattaagctgaacagtcatttgcgcttagatatagatgag
aatctcactgtccttactaaggatgacatagtacacgtaataaagaagttggttttattg
cctgatggtgagggtgtagttgatgatatagaccatcttggtaataggcgggtaaggtct
gtaggggagttcatagagaatcaattccgggttggtatattgcggctcgagagaatgatt
atggattacatgtcctcggttaactttgataatgcggtgccgtgtgactttgttaatcct
aagatcttggctacggtgttgaaagactttttcagttcttcgcagctttcgcagtttatg
gatcagactaatcctctctcagaggttacgcataagcgtaggttatcggcgttgggtcct
ggtggtttaacgagagaaagggctggttttgaagttcgtgacgttcaccctacgcactat
ggtaggatatgtcctattgaaactccggaaggacagaatattggtcttattagtagtctc
gctatatatgctaagataaacaagtatggctttattgaaagcccgtacaggaaggttatt
gatggcgtagttactgattctgtagagtatcttttggctacacaggagagtgactattat
attgctgatgcgggcgctgcccttgatgagaataaccgttttgtggatgatatgctgtat
tgtcgccatggcggtaacttcgtgatggtgaagcgtgaagacgtgaattacattgatgta
tctccaaagcagatagtttctgttgcagcgtcgctgattccgtttttggaaaacaatgac
gcgaaccgtgctctaatgggttcaaatatgcagcgtcaggcggtgccattactaaaggct
gaagcgcctttggtgggtactggtatggaatcagttgttgcggcaggttcaggtgccgtc
gtattggctaagcgcgatggtgtagtacacagggttgacgggtcttatatcgtaatcagg
gcttttgataagaataaggacgagtatcttggtgttgatatatacaaactgagaaagttc
cagcgttcaaatcataatacatgtatcaatcagaggcctatagttaagataggggattac
gttaggactaatgatgttattgccgatggtgccgctatagatcgtggtgagttggcgttg
ggtaaaaatgtccttgttgcctttatgtcatggcagggttacaactttgaggactcgata
gtaatatccagtgatgttgtgaagagggatgtcttcacttcaattcacatagaagagttt
gaatgtgttgtgcgggatactccgcttggtcctgagaagatcatgcgttcggtgccggat
gtgaatgaggaaagtctcagtcatctggatgatgttggtattgtaaatatcggggctgag
gtttctgctggtagtgttttggtgggtaaagtgactccgagaccgccggtttcattgccg
cctgagacgaagcttttggtgacaattttcggtgagaaggtattcgattgcgttgattct
tctttatatttgccgccggatgttgagggaacggttatagacgttcatgtgtttgttaga
aggggcgttgaggagaatgatagatctttgcttatcaagcaaagtgaggtgaatagcttc
aggaaggagcgtgactacgaaatagatgttgtcagtgagtacttctatgatgagctgaag
aagttgctttgtagtgctgatttgccgttgaatggtcatgctgatgtagagagtcttcta
gctgcgaagtctttggaagcgttatgggaaattggtctatcgaatcctaagatatctgcc
aaagttgctgatatgaagggtaaatttgatgagttgattactgaagctcatagtaaattt
gaccaaaagatagacaagcttaattacggctatgatttgccgcagggtgttctgactatt
gtaaaggtctttgtggctgttaagcataatttgcagccaggagataaaatggctggtcgg
catggtaacaagggggttatttcgagaatagttcctgttgaggatatgccgcatctagag
gatggtacgcccgtggatataatcttgaattctctgggtgtaccttcgcgtatgaatata
gggcagatccttgaaactcacttgggttgggctgcagtgaatttgggtcatagggtaggt
aggatgcttgattcaggggaagaagaagggccggtagttgagagtattcgtagctttttg
agcgaagtatatgaagggcaaaagcttaaggaagatgtggcttctatgtcggatgaggct
ttgctgaagtttgccaataggctcagaagaggtgttcctatggctgctccggtgtttgag
ggtccgaaggatgcgcagatttcccggcttttggaattagcggatgttgatccgtctggg
caggtggatctttatgatgggcgttcagggcagaagtttgatcgcaaggtaactgttgga
tacatttacatgttgaagctccatcacttggtggatgacaagatacatgctaggtctgtt
ggtccgtatggtctggttactcagcaacctcttggaggaaagtcgcactttggtgggcag
agatttggggaaatggaatgctgggcattgcaggcctatggtgctgcttatactttgcag
gaaatgctaactgtcaaatctgacgatatcgtaggtagggtaagaatctatgaatccata
attaagggggatagcaacttcgagtgtggtattcctgagtcgtttaatgtcatggtcaag
gagttacgctcgctgtgccttgatgttgttctaaagcaggataaagagtttactagtagc
aaggtggagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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