KEGG   Anas platyrhynchos (mallard): 101790986
Entry
101790986         CDS       T02816                                 
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
apla  Anas platyrhynchos (mallard)
Pathway
apla04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:apla00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101790986 (COL27A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:apla00536]
    101790986 (COL27A1)
Glycosaminoglycan binding proteins [BR:apla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   101790986 (COL27A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 GH131_N Laminin_G_3
Other DBs
NCBI-GeneID: 101790986
NCBI-ProteinID: XP_027326476
Ensembl: ENSAPLG00000002637
EnsemblRapid: ENSAPLG00030020170
Position
18:5411119..5564908
AA seq 1745 aa
MEPESEPVSRLRATAAGRGGFCFVWTVLCFSWFLGFTQGNSEDVDVLQKLGLAGRRPSSG
WSSSRAVPQGVIPFKSGVIFTQRARVEAPISTILPAGSSVDLLLVLSLCSHRINNAFLFA
VKSKKKKLQLGVQFVPGKIIVYVGHKRSVYFDYNVHDGQWHNMAIDIRGQTVTLFTSCGK
RRVHADLHFKKDEALDPHGSFLFGKINQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQC
RQADTYRPNLPPLIPILPRDPSASPSTPQRMEPSLQGLKNLTTATPWLEFGRVTAPLKPR
GSGATTAALVSSPLPRLTTKATKVTVAPSPVPSSTETQPPTRSQPRGTATTLRVSRPTPS
TRMEKTPLPTAKKAPPASQNPATAGRKESKQETKKKMNQKPTIESSEVPSTVKPTRRRID
NTTSSVHFVTLKQTPQTPSNGLLPKKHASPPTRKVDPSSVPLVYTKSPLGSARPVSRARA
QAFNLTTPAATDGYQIFDPLGPTPFPFLVGFPGVKGERGPQGPPGLPGLPGPPGKRGSRG
PPGPHGNPGLPGPPGLKGQKGDPGLSPGKARSGQKGDVGLPGLTGFPGPPGRKGYKGYPG
PPGHPGDQGERGPDGSPGAKGYPGRQGLPGPIGEAGPKGSRGYIGLPGLFGLPGADGERG
IPGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGSVGPIGYPG
PKGLKGLMGNPGEHGLKGDKGDQGGAGVPGDVGFQGDKGSQGLPGVPGARGKPGPLGKVG
DKGPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLPGQEGDEGPLGPPG
VPGPEGRPGRKGFPGRPGPDGPKGEPGNHGRPGKVGEQGLMGFIGPVGEPGIVGEKGDRG
SVGPPGPPGVKGSMGHPGIPGAVGFPGIPGPAGPAGVRGAPGTRGMKGRRGARGPDGPVG
EPGSRGAKGRPGEPGKLGPEGLQGKMGETGETGSRGFPGIQGPSGPPGAKGAPGDPGPQG
PQGPPGPLGEIGHKGPPGSMGQPGLAGEPGMKGDPGQLGAPGEQGLIGQRGEPGLEGDSG
PPGPDGIKGDKGEQGLEGEKGEKGTEGLKGKEGPPGYPGITGVRGPEGKPGKQGEKGKPG
QKGSKGYQGQLGETGAPGKEGPKGNQGPKGSRGTLGPMGAPGRMGAQGEPGLKGYQGHAG
PPGPIGPPGPKGEKGEQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQEGLDGER
GKPGQQGLPGDPGPPGQPGAKGSKGDVGQKGKQGARGSAGSRGSPGTLGLPGPRGVVGRQ
GQEGAPGVDGVPGKDGVPGVLGEQGDDGEEGVTGMSGKRGNPGIPGLPGAQGPPGFKGER
GLPGQTGQTGKRGSPGGMGLPGSPGNAGPKGQPGDFGEAGFPGIAGIFGPKGPPGDLGFK
GIQGPRGPPGLMGKEGIIGPHGILGPTGSPGPKGDKGSRGEMGLPGPRGPPGPRGHPGPP
GPPGIPASFQQDGFGAAFRTLIDSSTALKTESYQNPDLLMLDHGGEIFKTLHYLSNLIQS
IKRPLGTKENPARICRDLMNCEQKMNDGTYWIDPNLGCSSDTIQVICNFTNGGQTCLSPI
TVSKLDFDVGRVQMNFLRLLSSEVVQHITIHCLNTSVWREGSSKKPSDKAVRFKAWNGQM
FEAEGQLKPEVAADDCKIKDGRWHRTLFSFRTQDPQQLPIVNIYNLPPSEPGKQYHLEVG
PVCFL
NT seq 5238 nt   +upstreamnt  +downstreamnt
atggagccggaatcagagccggtctccagactcagagctacagcagcaggcaggggggga
ttctgctttgtctggactgtgttatgttttagctggttcctgggattcacacagggaaat
tctgaagatgtggatgttcttcagaagctgggcctggcagggagaaggccgtcgagcgga
tggtcctcgtcacgtgcagttcctcaaggggtcattcctttcaaatcaggggtcatcttc
actcagcgagcgcgtgtcgaagcaccgatcagcaccatcctgcccgcaggctccagcgtt
gacttgctcctagtgctgagcctgtgctcccaccgcatcaacaatgcttttctctttgct
gtcaagagcaaaaagaaaaaactgcagctgggggtccagtttgtgcctgggaagatcata
gtatacgtaggccacaagcgctctgtatattttgattacaatgttcacgatggccagtgg
cacaatatggccatcgatatccgtggccagacagtcactttatttacttcttgtgggaag
cgcagagtacatgcggatttgcattttaaaaaggacgaggcattggatccacatgggtct
ttcctctttgggaagattaaccagcactccgtgcagtttgaaggagccatctgccagttt
gatatttatccttccgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgc
aggcaagcagatacctaccggccgaacctgccccccctcatccccatcctgcccagggat
cccagcgcctccccgagtaccccacagcgtatggagccctcgcttcagggtctgaagaac
ttgaccactgccaccccatggctggagttcggcagggtcacggcacccctcaagcctcgg
ggttcaggtgcaacaaccgccgcgttggtctcgtcccctctgccgagactgacaaccaaa
gccacgaaggtcacagtggccccgtctcctgtcccatcgagtaccgagacgcagccaccc
actcgttcacagcctcgggggacggcgaccaccctcagggtgtcccggcccactcccagc
acgcggatggagaaaactccccttcccactgccaaaaaggccccgccagcaagccagaac
cctgccacggccggcaggaaggagtccaagcaagagaccaaaaagaagatgaaccaaaaa
ccaaccatcgagtcctcggaagtgcccagtactgtaaagcccacgaggaggaggattgat
aacacaaccagcagtgtccactttgtcaccctaaagcaaaccccgcagaccccaagcaat
gggctccttccaaagaagcatgcgtcgccccccaccaggaaggtggatcccagcagtgtc
cctctggtgtacaccaaatcgcccctggggtctgcccgtcccgtctccagagcccgggca
caggccttcaacctcaccaccccagctgcgaccgatggctatcaaatctttgaccccctt
ggacccactccttttccatttttagtgggatttccaggagtgaaaggagagaggggaccc
cagggtcccccaggtctgccgggcttaccaggaccacctggcaagagaggttcccggggt
cctccgggtccccacggaaaccctggcttacctggccccccaggcctgaaaggtcagaaa
ggagatcctgggctgtcgcctggaaaagctcgcagtggacagaagggagatgtgggctta
cctggtttgactgggttccctggaccacctggtagaaagggatataaaggctaccctgga
ccaccaggtcaccctggagaccagggtgaacgaggaccagacggaagccctggtgccaaa
ggttatcctggcaggcagggcttacctggccccataggggaagctggtccaaaaggcagt
cggggatatatcggtctcccgggattatttgggctaccaggggctgatggagaacgaggg
atccctggagttcctgggaagaggggcaagatgggtaggccgggttttcctggtgatttt
ggggagcgaggacctccaggcatcgatgggaacccaggagaattgggagccccaggtcct
cctggagtccttggactcattggtgacatgggctctgttggacctataggctatccagga
ccaaaaggcttaaaggggctgatgggaaaccctggagagcatggactgaaaggtgataag
ggtgatcagggaggagcaggtgtgccaggagatgttggcttccaaggagacaagggtagc
caaggtttgcctggggtccctggggcacgagggaagccaggccccctgggaaaagttggt
gacaaaggtccggttgggtttccaggaccacctggccctgagggctttccaggggacatc
ggcccgccgggagaaaatggccctgaaggcctaaaggggaagccgggagcacgaggttta
cctgggccgagaggactgcctggacaagagggagatgaagggcccttaggaccaccagga
gtccctggtccagagggtcgacctggccggaagggatttccgggaagacctggtcctgat
ggtccaaagggcgagccaggaaaccacggccgaccagggaaagttggtgagcagggtcta
atgggcttcattggtccggtaggggagcctggaatagtgggagaaaagggtgaccgtggc
tcagtgggacccccgggccctccaggagtcaaggggtcgatgggacaccccgggatacca
ggagcagtgggttttcctggaatccccggaccagcaggtccagcaggagtccgcggtgca
ccagggaccagagggatgaagggccgcaggggtgccagaggccctgatggaccagtaggc
gagccggggtcacgaggtgccaagggccgtccaggggagccaggcaagctggggccagaa
gggctgcaggggaagatgggcgagactggggagacaggatcgcgtggcttcccaggtatc
caagggccttcaggacctccaggagcaaaaggggcaccaggcgacccgggtccacaagga
ccacaggggccgcctgggcctttgggagaaatcgggcataagggaccgcctggctcaatg
ggacaacctggccttgcaggtgaacctggcatgaagggtgatcctggccagctgggagct
ccaggagagcaaggcctcatcggtcaaagaggagaaccagggctggaaggggacagcgga
ccacccgggccagatggaatcaagggagacaaaggagagcaaggcctggaaggagagaaa
ggagaaaaaggcactgaaggactgaagggaaaagaagggcctcctggatatcccggcatc
acaggtgtccgaggaccagaagggaaaccaggaaaacagggggaaaaaggcaagcctggc
cagaagggcagcaagggctaccaggggcagctcggcgagacaggagctccagggaaggag
gggccgaaggggaaccaaggccctaaaggatcccgaggtaccctgggacctatgggtgct
ccgggaaggatgggtgctcagggggagcccggcttgaagggttaccagggacacgcagga
ccaccagggccgattggaccaccggggccaaagggggagaagggagaacaaggtgatgac
gggaaggtggaaggcccgcagggaccacccggagacagaggccccgttggtgacagagga
gatcgaggggaacctggagaccctggttatcctggtcaagaagggcttgatggagaaaga
ggaaaacctggacagcaaggcttacctggggatcctggaccaccaggccagccaggagca
aagggatccaaaggtgatgtgggtcaaaaaggaaagcaaggagcaaggggcagtgccggg
agcagaggctcaccgggcacgcttgggctaccaggtcctcgaggagtggtgggaaggcag
ggtcaagagggtgcccctggcgtggacggagtgcccggaaaggatggcgtgcctggggtg
ctgggagagcagggagatgatggggaagaaggtgtaacagggatgtcaggcaaaagaggg
aaccctggcataccaggactgcccggggcacagggaccaccaggattcaagggtgaaaga
ggattgcctggacagactggccaaacagggaagcgaggatcaccaggaggaatgggcctt
ccagggagccctggcaatgcaggccccaaaggccagccgggagactttggtgaggcagga
tttccagggatcgcgggcatctttgggccaaaggggcccccaggagaccttggtttcaaa
ggcattcagggaccacgtgggccacccggcctcatgggaaaagaaggaattattggtccg
catggcattctgggtcccacaggaagccccgggccaaagggagacaaaggcagccgcggg
gaaatgggtcttccaggtccaaggggtcctccaggcccacgaggacaccctggccctccg
ggacctccaggaattccagcttcatttcaacaagatggctttggggctgctttccggaca
ctgatcgactccagcaccgcgctcaagacagagagttaccagaatccagaccttctcatg
ctagaccacggaggggagatctttaagactctacactacctcagcaacctcattcagagc
atcaagagacccctgggcaccaaggagaaccctgcacgcatctgtcgagacctcatgaac
tgtgaacagaagatgaacgatggtacctactggatcgacccaaatctcggctgttcctca
gacaccatacaggtcatctgcaacttcaccaacggtgggcagacatgcctcagccccatc
actgtctccaagctggattttgatgtcggcagagtccagatgaacttccttcgcctgctg
agctcggaggtggtgcagcacatcaccatccactgcctgaacacctctgtctggcgggaa
ggctcatccaagaaaccttcggacaaagccgtgcgcttcaaggcctggaacgggcagatg
tttgaggcagaaggtcagctcaagccagaagtggcagctgatgattgcaagatcaaggac
ggacgctggcatcggactctcttttcatttcggacgcaggaccctcagcagctgccaatt
gtcaacatctacaaccttcccccatccgagccaggaaagcaataccacctcgaggtcggc
cccgtgtgcttcctttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   ENSEMBLRAPID (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (67)   

Download RDF
DBGET integrated database retrieval system