KEGG T01435: Asphe3

Arthrobacter phenanthrenivorans: Asphe3_04250

Entry

Asphe3_04250 CDS T01435

Definition

ATP-dependent DNA ligase LigD

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

apn Arthrobacter phenanthrenivorans

Pathway

apn03410	Base excision repair
apn03420	Nucleotide excision repair
apn03430	Mismatch repair
apn03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:apn03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:apn03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:apn03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:apn03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2

Other DBs

NCBI-GI:

325961868

NCBI-GeneID:

10283800

UniProt:

F0M9G3

Position

complement(447302..449830)

AA seq 842 aa
MTLTNLDKVIYPETGTTKADVLAYYAAVGHVLIPAAANRPATRKRWVNGVGTADKPGEVF
FQKNLEDSAPGWLPRAAITHKDRTIYYPMVNDPATLAWFGQINSLEIHVPQWQVDSHGNQ
LNPDRLVLDLDPGEGAGIEECVEVALLARSILEDVGLDPVPVTSGSKGIHLYAALDRSQT
SDQISAFARELARALESDHPDLAVSDMKKTLRKGKVLVDWSQNNAAKTTIVPYSLRGRPT
PMVAAPRTWEEIGSPGLTHLDYHEVMRRVREGIDPFAAVVRASGHSADDVAAHREDSHDG
NPRLAKYRSMRDPQATPEPFSGAAGSGDAFVIQEHHASRLHFDLRLEHEGVLVSWALPKG
VPESSGKNHLAVQTEDHPMDYLTFQGTIPKGEYGAGEMTIWDHGTYDLHKWINGKEVIVT
LKGSEGGGLGGTRKFALIHTGRGQGKESEGQWLIHLMDPEHRGGRRRHASPRGEQEEAGQ
PEAAGEPLQDEAPKNPVTTKTAPAKTATTADDSSAVAAAGAAPSPEDYRPMMATSGDAAD
LQGSNWQFELKWDGVRAIVLGDGGAVRIFSRNGIDVSRTYPEFTDRSCWPERPFVADGEI
VAVGPAGRPDFGLLQGRMKLTRPADVERARKAIPVQLMLFDLLHDDGTDLRRLPLAKRRQ
RLEDFFTPAGCPAQLSPVLEEQVEDILDSARELGLEGVMAKRTDSRYVSGQRTRTWIKLK
VEQTQEVVVGGWRPGKGGREDTVGSLLVGIPDGKKLQYAGRVGSGFSGRELAELRQTVDR
LARKTSPFLDVPRPDAADAHWVAPELVGEVTYSEWTGTGRLRHPVWRGWRLDKDPAEVVR
EG

NT seq 2529 nt +upstreamnt +downstreamnt
ttgaccctcaccaacctggacaaagtgatctacccggagaccggaaccaccaaggccgat
gtcctggcctactacgcggcagtgggacacgtcctgatcccggcggcggccaaccggccg
gccacgaggaagcgctgggtgaacggggttgggacggcagacaaacccggagaggtgttc
ttccagaagaacctcgaggactccgcgcccggctggctcccccgggcagccatcacgcac
aaagaccgcaccatctactaccccatggtcaacgatcccgccacgctagcctggttcggc
cagatcaactccctggaaatccacgtgccgcagtggcaggtggattcccacggcaaccag
ctgaaccctgaccggctggtcctggacctggatcccggcgagggcgcgggaatcgaggaa
tgcgtggaggtggcgctcctggcccgctcaatccttgaggatgttggcctggatcccgtc
cccgtgaccagcggcagcaaaggcatccacctttacgccgccctggaccggagccagacc
tcggaccagatctccgccttcgcccgtgagctcgcccgcgccctcgagtcggaccatccc
gacctcgccgtcagcgacatgaaaaagaccctccgcaagggaaaagtcctggtggactgg
agccagaacaacgcagccaagaccaccatcgtcccgtactccctgcgcggccgccccacc
cccatggtggctgcgccccggacttgggaggagatcggttcccccggcctcacccacctg
gactatcacgaggtcatgcggcgggtgagggagggcattgacccgtttgccgccgtcgtc
cgtgcgtcgggacattctgccgacgacgtggcggcacaccgggaagacagccacgacggc
aacccccgcctggccaagtaccgttccatgcgtgatccccaagccaccccggagcccttc
agcggcgctgccggcagcggggacgcattcgtaatccaggagcaccatgccagccgcctc
cactttgacctgcggctggagcacgaaggcgtcctggtgtcctgggccctgcccaagggc
gtcccggagtccagcggaaagaaccacctggccgtgcagaccgaggaccacccgatggac
tacctcaccttccaggggacgatccccaaaggggaatatggtgccggcgagatgaccatc
tgggatcacggcacctatgacctgcacaagtggatcaacggcaaggaggtcatcgttacc
ctgaaggggtccgagggcggcggcctgggcggcacccggaaattcgccctcatccacacc
ggccgcggacagggcaaggaatctgaagggcaatggctcatccacctcatggacccggag
catcgtggcggcaggcggaggcacgcgtccccgcggggggagcaggaggaagcggggcag
ccggaggcggccggggagccgctgcaggacgaggcgccgaagaacccggtgacgacgaaa
acagcgccggcaaagacggcaacgacggcggatgactcctctgcagtggcagcggcgggc
gcggcgccctccccggaggactaccggcccatgatggcaacctccggggacgcagccgac
ctacagggcagcaactggcagtttgaactcaagtgggacggagtccgcgccatcgtcctg
ggtgacggcggcgcagtacggatcttcagccgcaacggcatcgacgtgtccaggacctac
ccggagttcacggaccggagctgctggccggagcggccgttcgtggcggacggcgagatc
gtcgccgtcggacctgcaggacggcctgacttcggcctcctccagggcaggatgaagctc
acccggccggccgacgtcgaacgggcccggaaagccatccccgtgcagctgatgctcttc
gacctcctgcacgacgacggcacggaccttcggaggctgcctctcgcaaagcgccggcaa
cggctggaggacttctttacccctgcgggctgcccggcccagctttcccccgtcctggag
gagcaggtggaggacatcctggacagcgcccgggaacttgggctggaaggggtgatggcc
aagcgcacggacagccgctacgtgagcggccagcggacccggacctggatcaagctgaag
gtggagcagacacaggaggtggtggtgggcggctggcggccgggcaagggcggccgggag
gacaccgtgggatcactgctggtgggcatcccggacggaaagaagctgcagtacgcgggc
cgggtggggagcggcttcagcggccgggagctcgccgagctgcggcagacggtggaccgc
ctggcccggaagacgtcgccgttcctggacgtcccgcggccggatgccgcggacgcccac
tgggtagcgccggaactggtgggcgaggtgacctacagcgagtggaccggaacggggcgg
ttgcgacacccggtgtggcgggggtggcggctggacaaggacccggcagaggtggtccgg
gagggctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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