KEGG   Auxenochlorella protothecoides: F751_2326
Entry
F751_2326         CDS       T04132                                 
Name
(RefSeq) Exosome complex component RRP45
  KO
K03678  exosome complex component RRP45
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F751_2326
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apro03019]
    F751_2326
Messenger RNA biogenesis [BR:apro03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     F751_2326
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 23613717
NCBI-ProteinID: XP_011397496
UniProt: A0A087SFV4
Position
Unknown
AA seq 509 aa
MAIGPLSNLERDFIQNAIAAGVREDGRGPYDSRTPSFSFFPDDSGCVVALGDTLVSAGVS
ATLRPPFPDRPNEGSLRVSARLTPLAAPGSDPGARSAPEAEELALALERGLRDGRAVDLE
ALTVLPGRKVWHLDLALTVMGAGGGLLDAAGLAALAAVCAHRRPATRVDDAARGLVSLLP
PGTGETQPLSMHHLPVPVTFALFPGGHLAPATRVDGAARGLVSLLPPGTGETQPLSMHHL
PVPVTFALFPGGHLAVDPTAREERAAAGALALVLTPQGEVCAARKARGAGCAPSQLLRCA
RLGRGVAEERIAEGGGPRPAEAAAHEGVVAASTGSELVDEPMPERQPAPEEAATSEGDGA
LGGALKTDIPAEVLEVDAGADAAMEEAEAPTGTGGDTTGPAAGPSTTAAEAAGTPAPANP
SQARVESASQAGAGSADAGVAAGSGRKKKRRKARAAEAAADGQAEDPYAAIAEMIARAGK
AAAPGTAPPADLRSAMRTQQARQRKQAGK
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggcgatcgggccactctccaacctagaacgtgatttcatccagaatgccatcgccgcg
ggcgtgcgtgaggacgggcgtggcccctacgactcccgcaccccctccttctcctttttc
cccgacgactcggggtgcgtggtggcgctgggggacaccctggtctccgccggggtctcc
gccacgctgcgcccgcccttccccgaccgccccaacgagggctccctgcgcgtctccgcg
cgcctgaccccactggccgccccggggtccgaccccggcgcgcgctcggccccggaggcc
gaggagctggcgctggcgctggagcgcggcctgcgcgacggccgcgccgtggacctggag
gcgctcaccgtcctccccggtcgcaaggtctggcacctggacctggcgctgacggtgatg
ggcgcaggcggcggccttctggacgccgcggggctggccgcgctggcggcggtgtgcgcg
caccgccgccccgcgacgcgggtggacgacgcggcgcgcggcctggtctcgctgctgccc
cccgggacgggtgagacgcagcccctgtccatgcaccacctccccgtgcccgtcaccttt
gcgctcttccccggcgggcacctggcgcccgcgacgcgggtggacggcgcggcgcgcggc
ctggtctcgctgctgccccccgggacgggtgagacgcagcccctgtccatgcaccacctc
cccgtgcccgtcacctttgcgctcttccccggcgggcacctggcggtggatccgacggcg
cgcgaggagcgcgccgcggccggcgcgctggcgctggtgctgacgccacagggcgaggta
tgcgccgcgcggaaggcgcgcggcgccggctgcgcgccctcgcagctcctgcgctgcgcg
cgcctggggcgcggcgtggccgaggagcgcatcgcggagggtggggggcctcgaccggcg
gaggcagcggcgcatgaaggggtcgtggcggcgtctacggggtcggagctcgtcgacgag
cccatgccggagcggcagccggccccagaggaggcggcgaccagcgagggcgatggagca
ttgggcggcgctctgaagaccgacattccggcggaagtcctggaggtcgatgcgggggcc
gatgccgcgatggaggaggccgaagcgccgactggtaccgggggagacacgacaggcccg
gcggctggaccttccaccaccgcggcagaggcagcaggaacgccagcgccggccaacccc
agccaggcccgtgtggaaagcgcatcacaggcaggagccggcagcgcagatgcgggcgtg
gccgcggggagtgggaggaagaagaagcggaggaaggcgcgcgccgcagaggcggccgcc
gatgggcaggcggaggacccttacgccgccatcgcggagatgatcgcgcgggcgggcaag
gctgccgcgccgggaaccgcccctcccgccgacctgcgctccgcgatgcgcacgcagcag
gcacgccagaggaagcaggcggggaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (37)   

Download RDF
DBGET integrated database retrieval system