KEGG   Acetobacter pasteurianus IFO 3283-32: APA32_09270
Entry
APA32_09270       CDS       T01817                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
apz  Acetobacter pasteurianus IFO 3283-32
Pathway
apz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:apz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    APA32_09270 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:apz03021]
    APA32_09270 (rpoB)
   03400 DNA repair and recombination proteins [BR:apz03400]
    APA32_09270 (rpoB)
Enzymes [BR:apz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     APA32_09270 (rpoB)
Transcription machinery [BR:apz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     APA32_09270 (rpoB)
DNA repair and recombination proteins [BR:apz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      APA32_09270 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DOCK-C2 SPG4 DUF6218
Other DBs
NCBI-ProteinID: BAI14316
NITE: APA32_09270
Position
964830..969023
AA seq 1397 aa
MGGAGATMNAITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYETFLQANVSPDARTP
TGLQEVFRSVFPINDFAGRGRLEFVSYEFEEPKYDVEECIQRGLTYAAPLKVILRLIVWD
VDEDTGSRSIRDIKEQPVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKT
HSSGKYLFAARVIPYRGSWLDFEFDAKDLLYVRIDRKRKLPVTTLLYALEGAASEAARKA
KAAEGGDVDSMEIKGMDANEILAYFYNAVTFVKTPKGWARPFDADSFRGLKLLAPLVDAE
TGEVVAEAETKLTARMVRKIAEKTREVLVGEIDLLGRYIAHDIVNMQTGEIYGEAGEEIT
EARLAALEEAGITELPLLAIDAANGPWIRDTLTVDKNSTRDEALIDIYRVMRPGEPPTAE
TAEAMLNGLFFDPDRYDLSAVGRVKMNMRLDMDVPDTVRVLRKEDILRTIKTLCDLKDGR
GQIDDIDNLGNRRVRSVGELMENQYRIGLLRMERAIRERMGSVDIDTVMPHDLINAKPAA
AAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRIC
PIETPEGPNIGLINSLATYAKVNKYGFIETPYRLVKDGVLQDGWKYLSAMEEEKLVVAQA
DAKVNDQGALTSDLISVRRNGDFRLVPPTEVTACDVSPKQLVSVAAALIPFLENDDANRA
LMGSNMQRQAVPLVRSDAPLVGTGMEAAVARDSGATIVAKRDGIVDQIDGARIVVRATNA
TGSTQGVDIYRLRKYSRSNQSTCINQRPLVHVGDNVRAGDIIADGPSTELGELALGRNVL
VAFMPWNGYNFEDSILISERIAKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEA
LRNLDEAGIVYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLP
PGTSGTIVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYSRLREKLLG
QVAGAGFKGIRSGTEITDAVLDEHPRATWRQIVVASDSVMAELETLRREFDAAIARIQAR
FESKVEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFL
EDGTAVDLVLNPLGVPSRMNVGQILETHLGWACAKIGRGIGDMVDEYQRNGEKRQELLDR
LKDVYGDKVYSEDIANMSNDELVELANNLRKGVPIATPVFDGASIPDIEAMLEKAGVDKS
GQSQLIDGRTGEPFERKTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGG
QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYESIVREQDDFEAGIPESFNVLI
KELKSLGLNVELEQGAE
NT seq 4194 nt   +upstreamnt  +downstreamnt
atgggcggggcaggagcgacgatgaacgcaatcactaaatcgttcacaggacggaagcgg
attcgcaaaagtttcgggcggattcccgaaatcgccccgatgccgaacctgattgacgtg
cagcgtgcgtcttacgagacattccttcaggcaaatgtatcgcctgatgcacgtactcca
acaggtttgcaggaggtattccgttccgttttccccatcaatgattttgcggggcggggg
cgtctggaattcgtcagttacgaatttgaagagcctaaatatgatgtggaagaatgcatt
cagcgtggcctgacatatgccgcaccgctgaaggttattttgcgcctgatcgtatgggat
gtggacgaagatacggggtctcgttccattcgcgatattaaggaacagccggtttatatg
ggcgatatgccgctcatgacagacaacggcacctttatcgtaaacggtacggagcgcgtt
attgtcagccagatgcaccgttcacccggtgtgttctttgatcatgataaaggtaaaacg
cattcttccggcaagtatctgtttgccgcgcgcgttatcccttaccgtggttcctggctg
gacttcgaatttgacgccaaagatctgctttacgttcgtattgaccgtaagcgtaagctg
cctgttaccacgctgctgtatgcgcttgaaggcgcagcgtctgaagctgcacgcaaggcg
aaggcagctgaaggtggcgatgttgattctatggaaatcaaggggatggatgctaatgaa
atcctcgcctatttctataacgctgtcacattcgtaaaaacacctaagggctgggcgcgt
ccgtttgatgcggattctttccgtggtctcaagctgctggcaccgctggtggatgcagaa
accggtgaagtggtggcggaagccgaaaccaagctgaccgcccgcatggtgcgcaagatc
gcggaaaaaacgcgtgaagtgctggtgggtgaaatcgatctgcttggccgttacatcgct
catgatatcgtcaacatgcagactggcgaaatctatggtgaggctggtgaagaaatcacc
gaagcgcgccttgctgctctggaagaagctgggattacagagcttcctttgctggcgatt
gatgcagctaacggcccgtggatccgtgatacgctcacggtagataaaaacagcacgcgt
gatgaagcgctgattgatatctaccgcgtaatgcgccccggtgagccgccaacggctgaa
acagccgaagccatgctgaatggcctgttctttgatcctgaccgctatgatctttccgcc
gttggccgcgtgaagatgaatatgcgtctggacatggatgtgccggacacagtgcgcgtg
ctgcgcaaagaagacattctgcgtaccattaaaacgctgtgtgacctgaaagacggtcgc
ggccagattgacgatattgataaccttggtaaccgtcgtgttcgctcggttggtgagctg
atggaaaatcagtaccgcattggcctgctgcgtatggaacgtgctatccgtgaacgcatg
ggttctgtggacattgatacggtcatgccgcatgacctgatcaacgctaaacctgccgcc
gccgctgtgcgtgagttcttcgggtcttcccagctcagccagtttatggatcagaccaac
cccctgtctgaagtcacgcataagcgtcgtctctcagcgcttggcccgggcggtttgacc
cgtgagcgcgcaggctttgaagtgcgtgacgttcatccaacgcattacggtcgtatctgc
ccaattgaaacgccggaaggcccgaacattggtctgatcaactctctggcaacctatgcc
aaagtaaacaaatacggctttattgaaacgccttaccgtctggtgaaggacggcgtgctg
caggacggctggaagtacctctccgctatggaagaggaaaagctggttgttgcgcaggct
gatgccaaggtgaatgatcagggtgcgctgacaagcgatctgatctctgtgcgccgtaac
ggtgacttccgtctggttccgccaacagaagttacagcgtgtgacgtttctcccaagcag
ttggtgtctgttgctgcagcgcttattccgttcttggaaaacgatgacgcgaaccgtgca
ttgatgggttccaacatgcagcgtcaggctgtgccgctggtgcgttccgatgcaccgctg
gttggcacaggcatggaagctgctgtggcgcgtgattccggtgcaacaatcgtcgctaag
cgcgatggtattgttgaccagattgacggtgcccgtatcgtggtacgtgcaacaaacgca
acaggctctacgcagggtgtggatatttaccgtctgcgtaaatattcccgttccaaccag
tccacctgtatcaaccagcgccctctggtgcatgttggtgacaatgtgcgggctggcgat
attattgccgatggtccttccacagagctgggtgaactggccctgggccgtaacgtgctg
gtcgcgtttatgccttggaacggctacaacttcgaagactccatcctgatttccgaacgg
attgccaaggatgacgttttcacctcgatccatatcgaggaattcgaagtcatggctcgt
gataccaagctgggtcaggaagaaatcacgcgtgatattccgaatgtgggtgaagaagcc
ctgcggaacttggatgaagccggcattgtttacgtaggtgccgaagttaatccgggtgat
attctgatcggtaaggtgacgccaaagggtgaaagcccgatgacaccggaagaaaagctt
ctgcgtgccatctttggtgaaaaagcctccgatgtgcgtgatacgtctctgcgtctgccg
cctggcacgtctggtacaatcgttgatgtacgcgtgttctcccgtcgtggcgtggacaaa
gatgaacgcgccatggctattgagcgtgcggaaatcgaacgtttggctaaagaccgtgac
gacgagcgcgctattcaggaacgttctttctacagccgtctgcgtgaaaaactgctgggg
caggttgctggtgctgggttcaagggcattcgctctggaaccgagatcactgatgctgtt
ctggacgaacacccgcgtgctacatggcgccagatcgttgtcgcttctgacagcgtgatg
gccgagcttgaaaccctgcggcgtgaatttgatgcggctattgcccgtattcaggcacgt
tttgaaagcaaggtggaaaagctgcagcgtggtgatgaactaccacctggcgtgatgaag
atggtcaaggtctttgtggctgttaagcgtaagctgcagcccggggataaaatggccggt
cgtcatggtaacaagggtgtggtttcccgcgttgttccagttgaagacatgccattcctg
gaagatggcacagccgttgatctggtgctgaacccactgggtgtgccttcacgtatgaac
gtggggcagattctggaaacgcatctgggctgggcctgcgccaaaattggccgtggcatc
ggcgatatggtggatgaataccagcgtaatggcgaaaaacgtcaggaactgctggaccgt
ctgaaagatgtgtacggggataaggtttacagcgaagacattgccaacatgagcaatgat
gagctggttgaactggccaataacctgcgcaagggcgtgccgattgcaacgccagtgttc
gatggtgcctccattccggatattgaagccatgcttgaaaaagctggtgttgataaatcc
ggtcagtctcagctgattgatgggcgcacaggtgagccgttcgagcgtaaaacaacggtc
ggttacatctacatgctcaagctgcaccatcttgttgatgacaagatccatgcacgctct
atcggcccatactcgctggttacacagcagcctctgggtggtaaggcgcagtttggtggt
cagcgctttggggaaatggaagtgtgggcgctggaagcatacggcgcagcttacactctg
caggaaatgctgactgtgaagtcggatgacgtttctggccgaaccaaagtttatgaatcc
atcgtgcgtgagcaggatgattttgaggccggtattccggaaagctttaacgttctgatc
aaagagctgaagtctctgggtctgaacgtagaactggagcagggggccgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system