KEGG   Amphimedon queenslandica (sponge): 100632485Help
Entry
100632485         CDS       T02284                                 

Definition
(RefSeq) general transcription factor IIH subunit 4-like
  KO
K03144  
transcription initiation factor TFIIH subunit 4
Organism
aqu  Amphimedon queenslandica (sponge)
Pathway
Basal transcription factors
Nucleotide excision repair
Module
Holo-TFIIH complex
Brite
KEGG Orthology (KO) [BR:aqu00001]
 Genetic Information Processing
  Transcription
   03022 Basal transcription factors
    100632485
  Replication and repair
   03420 Nucleotide excision repair
    100632485
Transcription machinery [BR:aqu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100632485
DNA repair and recombination proteins [BR:aqu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100632485
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: 
Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
Position
Unknown
AA seq 445 aa AA seqDB search
MATSCDLLTYLQSLPSAVLTRLYQHPPSCLAVYRSLSELGQLYIMRVLFIERPLPLADIN
SWALPGNNLHAETLSLLNKLHIFEPVLIRTGQQQGYQLNQSYQTNLRILICGGGQLWAVP
GHRGDDKHSRDIPYLNDYADKKWENILNFMVGGSEKLDSEIVQVLQYAGLMSQASSRHPS
FITTLGFQFLLMDTQSQIWQFILQYLNTAQDRGMDLIDCLKFIFQLSFSTLGKDYSTKGL
TESQLTFMYHLCQFGLVYQRKSSSKRYYPTKLVIQLTAGQQSRNTSQAGFIIVETNYRVI
AYTDSKLHIATLALFCQMQYRFPNVAVGTITRESIQQALVHGIKADQIISFLTQHAHHNM
LSKAHILPPTVTDQIKLWEIERNRLSFQEGILYSEFLSVTDYEKVKKYAEDLGVLLWSNR
QRRLMVIHPDRHDEIRHFWKRQKSS
NT seq 1338 nt NT seq  +upstreamnt  +downstreamnt
atggcgaccagttgtgatcttttaacatacttacaatcccttccttctgctgtactaact
cgtctttatcagcatccgccatcttgtctagctgtatacaggtcactatcagaattaggt
caattgtatattatgagagtgttatttatagagcgtccattgcctctagcagatattaac
tcttgggctcttcctggaaacaacttacatgcagagacactctcgctgttgaacaagctc
cacatttttgagccagtactaatcagaaccggacagcagcaaggctaccagctcaaccaa
tcataccaaaccaacctaagaatactaatctgtggaggagggcagctgtgggcggtacct
ggtcaccgtggtgatgacaaacactccagggatattccctacctgaatgactatgcagat
aaaaaatgggagaacattctcaatttcatggttggaggcagcgagaagttggactcagaa
atagttcaagtgttacaatacgctggactcatgagccaggcgtcttcaagacatccatcc
ttcattacaactcttggattccagtttctactaatggacacacagtctcagatatggcag
ttcatactacagtacttaaatacagcacaagatagaggaatggatctcattgattgcttg
aagtttatctttcagttaagtttttcaactcttggaaaggattactctactaaaggtctt
actgaatcgcagctaacgttcatgtatcatttatgtcagtttggtctagtgtatcaaaga
aagagtagctcgaaaagatactaccccacaaaactggtgatacagctaactgcaggtcag
caatcaaggaataccagtcaagcaggtttcattatcgtggagacaaattatcgcgttatt
gcctatacagattccaaacttcacatagccactttagcattgttctgtcagatgcaatac
aggtttcccaatgttgctgtaggcactattactagagagagcattcaacaggctttggtt
catggcataaaggcagatcagatcatatcatttttaacacaacacgctcaccataacatg
ctctcaaaggcacacatattaccacctactgtaaccgatcagatcaaactgtgggaaatt
gaaaggaacaggctaagctttcaagagggtatattatattctgaattcttatctgtcact
gactatgaaaaagtgaagaaatacgcagaggatcttggtgttctgctgtggagtaataga
caaaggcgactgatggtgatccatcctgacagacatgatgagataagacacttctggaaa
agacagaaatcatcttaa

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