KEGG   Psychromicrobium lacuslunae: UM93_01725
Entry
UM93_01725        CDS       T03775                                 
Name
(GenBank) ribonuclease
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
ari  Psychromicrobium lacuslunae
Pathway
ari03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ari00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UM93_01725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ari03019]
    UM93_01725
Messenger RNA biogenesis [BR:ari03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     UM93_01725
SSDB
Motif
Pfam: RNase_J_C Lactamase_B Lactamase_B_2 RMMBL BKACE BRK
Other DBs
NCBI-ProteinID: AJT40574
UniProt: A0A0D4BWA3
Position
368518..370209
AA seq 563 aa
MTQVAQPGLRTPPKLSPGTLRVVPLGGLGEIGRNMAVFEIDGKLLIVDCGVLFPEETQPG
VDLILPDFSYIEDRLDDVVAVVLTHGHEDHIGAVPYLLRLRQDIPLIGSQLTLALIEAKL
QEHRIKPYTMAVKEGQVEQLGPFECEFVAVNHSIPDALAVFIRTAGGNVLHTGDFKMDQL
PLDGRITDLRAFSRLGEEGVDLFMVDSTNADVPGFTTAEREIGPILDRLFGQAEKRIIVA
SFSSHVHRVQQVLNAAALHGRKVAFVGRSMVRNMGIAAQLGYLDVPPNILVDLKNVDNLP
DSQVVLMSTGSQGEPMAALSRMANGDHRVQVGQGDTVILASSLIPGNENAVFRVINGLLK
LGAEVIHKGNAKVHVSGHAAAGELLYCYNILKPKNVMPVHGETRHLIANGRIAQSSGVPA
ENVLLTDGGTVVDLVNHQAKIVGQVECGFVYVDGSSIGEVTETDLKDRRVLGDEGFISIV
TVVNRTTGKIVSGPEIHARGVAEDDSVFDEIIPKINAALEEAVTASKDHTNYQLQQVVRR
VIGTWVNRRLRRRPMIVPVVLEA
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgacccaagtagcccaacctggcctgcgcaccccgcccaaactctcaccgggaacattg
cgggttgtcccactcggtggtttgggggaaatcggccgaaatatggccgtattcgaaatt
gacggcaaactgctgatcgtggactgcggggtgcttttccccgaggagacccaacccggc
gtcgacctgatcttgcctgacttctcctatatcgaagatcgcctggacgatgtggtggca
gtggtgctcacccacgggcacgaagatcacattggtgcggtgccttatttgctccggcta
cggcaggacattccgctgatcggttctcagctgaccctggcgctgatcgaggcgaagctt
caggaacatcggatcaagccctacaccatggcggtcaaggaaggccaagtcgagcaactt
gggcccttcgaatgcgagttcgttgctgttaaccactcgatcccggacgctcttgcggtg
ttcatccgcactgccggcgggaacgtgttgcataccggtgacttcaaaatggatcagctt
ccgctagatgggcggatcaccgatttgcgggccttttcccgattgggtgaagaaggcgtt
gatttgttcatggtggattccacgaacgccgatgtgcccggcttcaccaccgcggagcga
gagatcggtccgattctggatcgtttgtttggccaggctgagaaacgcattatcgtcgcc
tcattctcctcgcatgtgcaccgggttcagcaggtgttgaacgccgcagccttgcacggt
cgcaaggtcgccttcgtgggtcgctccatggtgcggaatatgggtattgccgcgcaattg
ggctatcttgacgtgccgcctaatattctggtcgatctcaagaatgtggataatctgccg
gatagccaggtggtgctgatgagcaccggctcgcaaggtgaaccgatggcagcactatcc
cggatggccaacggtgatcaccgggttcaggtcggtcagggcgacaccgtgatcctggcc
tcatcactcattcccggtaatgagaacgcggtattccgggttattaatggtctgctcaag
ctcggtgccgaggtgatccacaagggcaacgccaaggtgcatgtctccggccacgccgcc
gctggagagctgctctattgctacaacatcttgaagccgaagaatgtgatgccggtgcac
ggcgagaccaggcatctgattgccaatggtcggattgcacagagcagcggagtgcccgct
gaaaacgtactgctgaccgacggcggcaccgtggtcgatctggtgaaccaccaggccaag
atcgttggtcaggtggagtgcggctttgtctatgtggacggcagcagcattggtgaagtg
accgaaacggatctcaaggaccgccgagtgctcggtgatgagggcttcatctccatcgtg
acggtggtgaaccgtaccaccggcaagattgtctccggccctgagattcatgcccgcggg
gtagccgaggatgactcggtgttcgacgaaatcattccgaaaatcaacgccgcccttgaa
gaggcggtgacggccagcaaggatcacaccaactaccagttgcaacaggtggttcgccgg
gtgatcggcacctgggtgaaccgtcggttgcggcggcggccgatgatcgtcccggtggtc
ttggaggcctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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