KEGG   Aequorivita sublithincola: Aeqsu_0606
Entry
Aeqsu_0606        CDS       T02132                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
asl  Aequorivita sublithincola
Pathway
asl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Aeqsu_0606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asl03019]
    Aeqsu_0606
Messenger RNA biogenesis [BR:asl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Aeqsu_0606
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA AAA_22 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AFL80115
UniProt: I3YSZ7
Position
complement(606986..608257)
AA seq 423 aa
MSFKSLGLSDALLQAISKKGYETPSAIQKKAIPLILERKDVLASAQTGSGKTAGFALPML
QILNSEPAFRKRPVRALILTPTRELAAQVEDEFREYSEFTDLRSTVIFGGVGANPQIKAL
RNGVDILVATPGRLLDLENQNALSLSKVEILVLDEADRMLDMGFLRDIKKILALLPNKRQ
NLLFSATFSKEIKKLANEFLHHPVLVEATPENTTVEKIDQTVYRVDKAQKTDLIIKLISE
GNWQQVLVFTRTKHGANRLSEKLEKAKITSAAIHGNKSQGARTRALSGFKEGKVRVLVAT
DIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEALSLVSLDEVGYLKDIEK
LIGERLVPKTIEDFQPTETMADVKADEEEKKRQKAAHHSRNRNSGNRGNSSSKGKGNRGG
GRR
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgtcatttaaatctcttgggctgtccgatgccctgctacaagcaattagcaaaaaagga
tatgaaacgccttcagcaattcaaaaaaaagcaattcctttaattttagaacgaaaagat
gtacttgcctccgcacaaaccggaagtgggaaaactgcaggctttgctttaccaatgtta
caaattttaaacagcgaaccggcatttagaaaacgtcccgttcgcgcattgatacttact
ccaactcgtgaacttgccgcgcaagtagaagatgagtttagagaatatagcgagtttaca
gacctacgttctaccgttatttttggtggagtaggagccaatccacaaataaaagccttg
cgtaatggcgtggatattttggtggcaacaccaggccgattgcttgatttggaaaatcaa
aatgcactttcactttctaaagttgaaatattagttttagatgaagcagatagaatgctg
gacatgggctttcttcgcgatattaaaaagatacttgctttgttgcctaataaaagacag
aatcttttattttctgcaactttttcaaaagaaataaagaaactggccaatgagtttctt
catcatcctgttttggttgaagccacgccagaaaatactactgttgaaaaaatagaccaa
acggtttatagagttgataaagctcaaaagacagatttaattataaaacttatttctgaa
ggcaattggcaacaagttttggtttttacaagaaccaagcacggtgcaaaccgtttaagt
gaaaagcttgaaaaggcgaaaattacttctgcagccattcacggaaataaaagtcaagga
gcgagaacaagagcgctttcaggatttaaagaaggaaaagttcgcgttttggtagctaca
gatattgccgctcgtggcttagatattccattgttgccgcacgttatcaactttgaactt
ccaaatatttcagaagattacgtccaccgaataggccgtaccggaagagcaggagccagt
ggtgaagcactttcattagtaagtcttgatgaggttggttacttaaaggatattgaaaaa
ctgattggcgagcgtcttgtgcccaaaaccattgaggattttcaacctaccgaaacaatg
gctgatgtaaaggctgatgaagaagaaaagaaacgccaaaaagctgcccatcatagtcgt
aaccgtaattctgggaatagaggaaattcttcttctaaagggaaaggaaatagaggtgga
ggaagaagataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (38)   

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