KEGG   Aequorivita sublithincola: Aeqsu_3115
Entry
Aeqsu_3115        CDS       T02132                                 
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module,ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
asl  Aequorivita sublithincola
Pathway
asl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:asl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Aeqsu_3115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:asl03400]
    Aeqsu_3115
Enzymes [BR:asl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Aeqsu_3115
DNA repair and recombination proteins [BR:asl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Aeqsu_3115
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: AFL82550
UniProt: I3YZY2
Position
complement(3385499..3387922)
AA seq 807 aa
MSLDKYIEKRKFDQTPEPKGVVNKENARRFVIQRHKASKLHYDLRLEMDGVLKSWAVPKG
PSMNASDKRLAIMTEDHPVGYLNFHGTIPKGNYGAGVMTIWDEGNYNVLLSEIGNDPVQQ
LEKGDLKIEFFGKKIKGTFALVHTKRGDKGNQWLLIKKKDEYSTDLEYDSEIFIENNNVK
SSESYRALDIQSFVKPMLASPAKKIFKDPEWVFELKWDGYRVLSNLFQNNVELYSRNGIS
YNEKFASIAKELKNIPHDCILDGEIVIIDKEGKNDFQKLQNYDDTIENLNLKYYVFDLLH
LNGMDTIALTLLERKSLLPELLNDLKNVFYCDHIQGMGPTLYNRALDAGMEGVIAKKADS
KYSPGYRSENWLKIKNSTTEEALICGYTDSVGGDTLFGSLILGQYNEEDLKYIGNCGSGF
SVTEQKELLAKFQKITIDESPFKEKINLKGRKPHWVKPFLVCEVKFSEKTKNGILRHPVY
KGIRQDKNVEEIVPQPIKEKKSFASNPSTLLDVNGISVPISNLEKVYWPEMGYTKYDLID
YYLNISDFILPYLKDRPQNLHRHPNGINGESFYQKDNDQLPNWVETTKIHSESSQKNIEY
LICQNQATLLYMANLGCIEINPWNSKINNLENPSYTVIDLDPSAENSFAEVIEVAQVAKE
VLDLFKIEGYCKTSGSSGIHIYLPLDELYSYQEARDFTKLLCYYIQERLPKLTSMERAVK
NRKGKIYLDYLQNRRGQTLASVYCVRPKVGATVSTPISWNELKKGLQLEDFTIKTVPKRL
EKIGDIFQGVLGQGINIENALGTISEK
NT seq 2424 nt   +upstreamnt  +downstreamnt
ttgagtttagataaatacatagaaaaaagaaagtttgatcagacgcctgaacccaaagga
gttgtaaataaggaaaatgcgagacgttttgttattcaacgtcataaagcttcaaaatta
cattacgatttaagattagaaatggatggagttttaaagagttgggctgttccaaaggga
ccttcaatgaatgcttctgacaaacgcttggccattatgaccgaggatcatcctgtaggt
tatttaaattttcatggcaccattcccaaaggaaattacggagcgggagtaatgacaatt
tgggacgagggaaattataatgtgttattaagtgaaataggaaatgacccagttcaacaa
ttagaaaaaggggatctgaaaatagaattctttggaaagaaaataaaaggaacatttgct
ctcgttcatactaaaagaggcgataaaggcaatcagtggctattgataaagaagaaggat
gaatattcaaccgatttagaatacgattctgaaatatttattgaaaacaataatgtaaaa
agttcagaaagttatagagctttagacattcagagctttgtaaagcctatgcttgccagt
cctgcaaagaaaattttcaaggatcctgaatgggtttttgaattaaagtgggatggatat
cgtgtactctcaaatctatttcaaaataatgtggaactatattcacgtaatggaatttca
tataatgagaaatttgcaagtattgcgaaggagttgaaaaatattccacacgattgcata
ttagatggagagatagttattatagacaaggaaggaaaaaacgattttcaaaaacttcag
aattatgatgataccattgaaaatttaaatttgaaatattatgttttcgacttacttcat
ctcaacggaatggatacaattgccttaaccctattagaacgtaaaagtctgttgcctgaa
ttattaaacgacctaaaaaacgtcttttactgcgatcatatccaaggaatggggccaaca
ttatataatcgtgcattggatgcaggaatggaaggggtaatagcgaagaaagcagattcc
aaatattctcccggatatagaagtgaaaattggttgaaaattaaaaatagcaccacggaa
gaagccttaatttgtggctacactgattctgtaggtggtgatacattattcggatcgctt
attttggggcaatataacgaagaagatttaaaatatatagggaattgtggttctggattt
tcagttacagaacaaaaggagttgttggcaaaatttcaaaaaattacaattgatgaaagt
ccatttaaagaaaaaataaatttaaaaggtagaaaaccacattgggtgaaaccattttta
gtttgtgaggtaaagttttcggagaaaactaaaaatggaattttgagacatcctgtctat
aaaggtataagacaagataaaaatgttgaagaaattgtccctcaacctattaaggaaaaa
aaatccttcgcttcaaatccttccacacttttagatgtaaatggaatatcggtaccaatt
tctaatttagagaaagtgtattggccagaaatgggttatacaaaatatgacttgatagat
tactacttaaatatttccgacttcatattaccgtatttgaaggatcgtcctcaaaattta
caccgccatcccaacggaattaatggagaatctttctatcaaaaggataacgatcagcta
ccaaactgggttgagacaactaaaattcattccgaatcttcccaaaaaaatattgaatat
ttaatttgtcaaaatcaagcaaccttactctatatggctaacttgggatgcatagaaata
aatccttggaattctaaaattaataatctcgaaaatccgagttatacggtaatcgatttg
gacccttcagctgaaaattcatttgctgaggtaattgaggtagcccaagttgctaaagaa
gttctggacttatttaaaattgaaggctattgcaaaacctctggctcctctggaattcat
atttatttgcctttggatgaactctatagttatcaggaagcaagagattttacaaaactg
ctttgctattacattcaagagcgtttgccaaaactaacaagtatggagagagctgtaaaa
aatagaaaaggaaaaatatatctagattacctgcaaaataggcgagggcagacattagct
tcagtatattgcgtgcgtcctaaagttggtgcaacagtttcaacgccgatatcttggaat
gaactgaaaaaaggtttacaattagaagattttactattaaaaccgttccaaagcgtctg
gaaaaaataggtgacatatttcaaggagtattagggcagggtatcaatatagaaaatgct
ttaggtacaatttctgaaaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (42)   

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