KEGG   Alligator sinensis (Chinese alligator): 102375357
Entry
102375357         CDS       T02922                                 
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
asn  Alligator sinensis (Chinese alligator)
Pathway
asn04510  Focal adhesion
asn04512  ECM-receptor interaction
asn04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:asn00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102375357 (COL4A4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102375357 (COL4A4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102375357 (COL4A4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:asn04147]
    102375357 (COL4A4)
   00536 Glycosaminoglycan binding proteins [BR:asn00536]
    102375357 (COL4A4)
Exosome [BR:asn04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102375357 (COL4A4)
Glycosaminoglycan binding proteins [BR:asn00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102375357 (COL4A4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102375357
NCBI-ProteinID: XP_025056224
UniProt: A0A3Q0G9A8
Position
Unknown
AA seq 1681 aa
MALTKYSFKWIKQIIAPWWLILIFSVKHIYGGTYAYIGPCEGRDCSVCQCFPEKGSRGQP
GELGSQGPIGPLGLTGPVGLPGEKGQRGENGLLGPAGEKGDKGPTGVPGFPGLDGLPGLL
GVGGHRGKPGLDGSNGSRGDPGFPGGKGYIGPRGPPGYFGQKGEKGMSVYVSHFRRGDPG
DRGDPGAAGVPGSRGARGAVGPHGYHGQPGLQGAPGHPGLPGEQGNPGIGVDGQKGELGD
VGSPGPPGQPLLVGPPGAMLMKGEKGQKGMTGVIGPNGLRGPKGAPGIGEKGEKGIPGVP
GIRGFPGSPGSQGSVGRKGRTGFPGAPGQAGYSGMKGDRGEQGLPGLPVSYGTPLLPVKG
PRGDPGFPGPDGEVGSDGPAGPSGPPGRPGEDGASLPGLPGVTGAQGHPGFQGDPGLPGR
AESNPGRPGAPGTPGLPGAPGRRGVSGTPGRVCTSNGPPGELGAKGQMGFPGRNGEKGEK
GSEGRCSCGPGPAGPPGVPGAPGGRGQKGEMGYPGRGGQKGDSGLPGTRGSTGLLGLHGT
PGMRGEKGEKGDPARIRIKGKKGEKGFPGIPGFPGQNGSAGRDGERGMPGEKGLPGDYRP
PLPGDKGFPGTPGHPGVRGPPGLPGLGIPGPKGNKGFFGDPGSPGVSGPPGLKGSKGDAH
CSVPPVPGNPGLPGFKGIQGPKGERGPPGLPGPDGFDGQKGQQGKTGIGIPGPGGFRGNA
GEPGGEGEKGFTSDGSTGSPGTPGRDGQKGAPGDTIYGPPGIPGSRGSAGSPGMQGMRGD
PGSRGPQGQPGTPGFPGAKGRRGKKGDMGALGRRGLPGEQCDTNLPGPLGLPGPKGWPGP
PGFPGSKGYQGDMGSPGSVGKKGIPGPNGIPGHSGPPGSQGSSGLPGDNGLPGLPGLKGR
KGIQGLRGFPGSPGKQGEMGIPGEKGEQGETGPPGLPGDPGDGGQKGEKGPQGDPGYIII
HHEKGQKGDPGPPGEQGFPGERGDKGSPGIRGLPGLPGTDGLPGLPGESGICGQIGLPGP
RGSPGPPGTRGIPGFSEAPGDQGEQGLPGTPGSPGPDGRKGCKGNRGDPSSQPGLPGPKG
PVGEPGLPGPHGFPGEPGFPGAQGQTGRQGPKGIPGYLGVPGFPGAVGVPGLPGVPGDQG
LIGLPGPAGLPGFSGSKGRKGMSGLPGLDGLNGLQGQKGSPGVPGHSNTGHPGYQGEAGL
KGDKGESGQPGISLPGPPGETGLLGLPGRAGGPGPKGHVGRAPEIAPRGLPGDRGPPGSG
SNRGPPGSAGPPGEIIFVKGDPGNFGIPGARGFPGQPGQQGAKGFPGKQGREGLHGLRGN
PGPQGPPGQVGQPGDQGIEGHPGPPGPKGFRGDPGEPGKVEDNLCPKFPGLPGRIGSKGH
EGPKGLQGPRGYTGFPGRKGEEGSPGLTGQDGTPGLPGPPGDQGDVGEQGYPGPQGSHGQ
TGIPGPPGPEVRAASGFLLVLHSQSDREPFCPQGMPKVWTGYSLLYLEGQEKAHNQDLGL
AGSCLPLFSTMPFTYCNINQVCYYASRNDKSYWLSSAAPLPMMPLSEDEIKPYISRCAVC
EAPAQAIALHSQDQFIPPCPQNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQQGTCQFFANEYSFWLTTVRPELQFTSAPLSQTLKEGQEQRKKISRCQVCLKY
G
NT seq 5046 nt   +upstreamnt  +downstreamnt
atggcgctaacaaagtattcttttaagtggattaaacagattatagctccctggtggctg
atacttattttctcagtgaaacacatttatgggggcacatatgcatacattggtccatgt
gaaggccgtgattgttcagtttgccagtgctttcctgaaaaaggatcaagaggtcaacct
ggtgaattagggtctcagggtccaattgggcctttggggcttacaggaccagttggtttg
ccaggagaaaagggacagagaggtgagaatgggctgcttgggccagctggagaaaaaggt
gataagggccccacaggagtcccaggctttcctggtttagatggcctgcctgggttactt
ggagttggaggacataggggcaaacctggcttggatggttccaatggttcaagaggagat
ccaggatttccaggggggaaaggatatatcggacctagaggcccacctggctattttgga
caaaaaggagaaaaaggaatgtctgtgtatgtttcacatttcaggaggggtgatccagga
gacagaggtgatccaggagccgctggtgtacctggatctaggggtgcaaggggagcagtg
ggcccacatggatatcacggccagccaggcttgcagggcgctccaggccaccctggtttg
ccaggtgaacagggaaatccaggcattggagttgatggacagaaaggggaattgggtgat
gttggatctcctgggcctccaggacagccactgttagttggccctccaggtgccatgctg
atgaaaggagaaaagggtcaaaaaggaatgactggagtgataggacctaacggattgcgg
ggaccaaaaggtgcacctggaattggggaaaaaggagagaaaggaattcctggagtccct
ggaataaggggttttcctggttctcctggatctcaaggttccgtaggaagaaagggaaga
acaggatttcctggtgctcctggccaggctggctattcaggcatgaagggagatcgtgga
gaacaagggctaccaggcctgcctgtttcttatggaacaccacttttgcctgtgaaaggt
cctcgaggagacccgggatttccaggtcctgatggagaagttgggtcagatggaccagct
ggtccttccggcccaccaggaagaccaggtgaagatggagcaagccttcctggcctacca
ggagtgactggtgcacaaggccatccaggttttcaaggtgaccctggtctccctggaaga
gctgaatcaaatccaggaagaccaggggctccaggcacaccagggttaccaggagcacca
ggaagacgtggtgtgtctggaacacctggtagagtttgtactagcaatgggccccctgga
gaattgggagcaaaaggccaaatgggatttccaggtcgaaacggtgaaaaaggagaaaaa
gggagtgaaggtcgctgctcatgtggtcctggcccagctggaccacctggagtaccagga
gcacctggtggtcggggacagaaaggagagatgggatatcctggaaggggtggacagaag
ggtgattcaggcttgcctggtacacggggatcaacaggactcctgggactccatggtacc
cctggaatgcgtggggagaaaggagaaaagggtgacccagctagaatcagaatcaaagga
aaaaaaggagaaaagggctttcctgggattccaggatttccaggccaaaatggtagtgct
ggaagagatggagagcggggaatgcctggagaaaaaggacttccgggtgattacagacca
ccactgccaggtgataaaggatttcctggaaccccaggacatcctggtgtgagaggaccc
ccaggactaccaggcttgggaattcctggcccaaagggaaacaaaggcttctttggggac
ccaggcagccctggtgtaagtgggccacctggtctaaagggttcaaaaggtgatgcacac
tgctctgttccaccagttcctggaaatccaggactcccaggttttaaaggtattcaagga
ccaaagggagaaagaggaccgcctggtctccctgggccagatggctttgatggacaaaaa
ggacaacaaggcaaaacaggcataggaattcctggaccaggaggtttccggggcaatgct
ggggagccggggggtgaaggtgaaaaaggctttacttcagatggaagcacaggctcacct
ggcactcctggaagagatggtcagaaaggggctccaggtgataccatttatggtccccca
ggaattccaggcagtagagggtcagctggatcacctggcatgcaaggcatgagaggtgat
ccaggcagccgtggaccacaaggacagcctggtacaccaggatttccaggtgctaaaggt
cgcagaggcaaaaaaggagatatgggagctctaggacggcgaggcctacccggtgagcaa
tgtgacacaaacttaccagggccactgggactgccaggtccaaagggatggccaggccct
ccaggctttccaggctctaaaggctaccagggggacatgggttccccaggatcagttgga
aaaaagggtattccaggacctaacggcatacctgggcactctggtcctccagggtcacaa
ggatcatcagggctccctggggataatggactgcctggtctcccaggactgaaaggaaga
aaagggattcaagggctccgaggtttcccaggatccccaggaaaacaaggggagatggga
atcccaggtgaaaaaggtgaacaaggagaaacgggtccacctgggctccctggagaccct
ggggatggaggtcaaaaaggtgaaaaagggccacaaggagatcctggttacatcatcata
caccatgagaaaggacaaaagggtgatccaggtcctcctggtgagcagggatttccagga
gaaagaggggacaaaggcagccctggaatcagagggctcccaggattgccaggcactgat
ggactccccggactcccaggtgaatctggcatttgtggacagataggtttaccaggccca
cgaggctccccagggccaccaggcaccagaggaattcctggtttctcagaagccccgggt
gatcagggtgagcagggtttaccaggaactcctggaagtccaggaccagatggcagaaaa
ggatgcaaagggaacagaggtgacccatccagtcaacctggtctaccgggtccaaaaggg
cctgtaggagagcctggcttaccaggtccccatggattcccaggtgagccaggttttcct
ggtgcccaagggcaaactggaagacaaggacctaaagggattcctggatacctaggagta
ccaggctttccaggtgctgtgggtgttccaggattgccaggtgttccaggtgaccaaggc
ctcattggactcccaggacctgcaggattgccaggattctctggttccaaaggcaggaaa
ggtatgtctggattgcctggattagatggcttgaacggactgcaagggcaaaagggttca
ccaggagttccaggtcacagcaatacagggcatccaggataccaaggagaagctggacta
aaaggagacaaaggtgaatctggacagccaggaatttctcttccaggtcctcctggagaa
acaggcctgctaggactgccaggtagagcaggaggtcctgggcctaaaggacatgttgga
agggctccagaaattgctccacgcggtcttccaggggatcgagggccacctggctcaggc
agtaacagaggtccgcctggcagtgctggccctcctggagagatcatctttgtgaaagga
gatccaggcaactttggtattccaggagcaagagggtttcctggccaaccaggccaacaa
ggagccaaaggctttccaggaaaacaaggaagagaaggcctacatggtctcagaggcaac
cctggtccccagggtcctcctgggcaagttgggcagccaggagaccagggcattgaaggt
catcctgggcctccaggtcccaaaggcttcagaggtgaccctggtgaaccaggaaaagtt
gaagacaacttatgccctaaatttccagggcttcctggcagaattgggtcaaaaggacat
gaagggcctaaaggattacaagggccaagaggctacactggattcccagggagaaaaggg
gaagaagggtcacctggcttgacaggtcaagatggtaccccaggtctgcctggtcctcca
ggtgaccaaggtgatgtaggagaacaaggataccctggaccacaaggttcacatggccaa
actgggatcccaggaccaccagggcctgaagttagagctgcaagtggattcctgcttgtc
cttcacagtcagtcagacagagagccattttgcccccagggaatgccaaaagtatggact
ggctatagtctgctatatctggaaggacaggaaaaagctcataatcaagatcttggtctg
gcaggatcttgccttcctttatttagtaccatgccctttacctactgcaacatcaaccaa
gtttgttactacgctagtcgaaatgataaatcttattggctgtcaagtgctgctcctcta
ccaatgatgccactctctgaagatgaaataaaaccatatattagcagatgtgctgtatgt
gaggccccagctcaagctatagcacttcatagccaagatcagttcattcctccctgccca
cagaactggagaagtctttggataggatattcctttctaatgcacactggatctggagac
cagggaggtggacagtctcttatgtcacctgggagttgccttgaagacttcagatcagca
ccattcattgaatgccagggtcagcagggaacatgtcagttttttgctaatgagtacagt
ttctggttaacaactgtgaggccagaattgcaattcacatctgctcctctgtcacaaact
ctcaaagaagggcaggaacagcggaaaaaaattagtagatgtcaggtatgcttgaagtat
ggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (2)   
   Pfam (2)   
All databases (83)   

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