KEGG   Alligator sinensis (Chinese alligator): 102378766
Entry
102378766         CDS       T02922                                 
Symbol
USP40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40 isoform X1
  KO
K11869  ubiquitin carboxyl-terminal hydrolase 40 [EC:3.4.19.12]
Organism
asn  Alligator sinensis (Chinese alligator)
Brite
KEGG Orthology (KO) [BR:asn00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:asn01002]
    102378766 (USP40)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:asn04121]
    102378766 (USP40)
Enzymes [BR:asn01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     102378766 (USP40)
Peptidases and inhibitors [BR:asn01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   102378766 (USP40)
Ubiquitin system [BR:asn04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    102378766 (USP40)
SSDB
Motif
Pfam: UCH UCH_1 YukD
Other DBs
NCBI-GeneID: 102378766
NCBI-ProteinID: XP_006020007
UniProt: A0A1U7RTG0
Position
Unknown
AA seq 1246 aa
MFGDLFEEEPSLAPGLPCGPGKKAKPRDAEPPAPREVTHLSGIKNQGGTCYLNSLLQTLL
FTPEFREALFSLGPEELGSLEDNNKPDAKVRIIPLQLQRLFAQLLLLDQQAASTTDLTDS
FGWNSNEEVRQHDVQELNRILFSALETSLVGTSGHDLINRLYHGTVVNQIVCKECKNISE
RQEDFLDLTVAVKDVSGLEEALCNMYVEEEYFENDNLYRCGACNKLVEASKSAKLRKLPP
FLTISLLRFNFDFEKCERYKETSCYTFPFRINLRPFCEQTELDDLEYMFDLFSVIIHKGG
CYGGHYHVFIKDVDELGNWQLQEEGNKLTKDKIVKDNESGKENENPLTDLKEILSQEESK
QIPVDQLGQKFLEKKGISWNKKYRKPFGPLRKYLQSHSQVFLFSPDGNKISLKENYHKLQ
FGSDSQGQDLQSPSQNNNVQWTSEKLSTRLKDDTSGSHWFDLNDSKVQPIKEKDIEKQFQ
GKESAYMLFYRKSRLKRPSEAHANPRYGIPEHLLNEMNAANAELQKRRAECDSADNNIDL
HLHLASRYKFYNGALHPSLSRKESVLDLTIDKRKTLGDLRQSVFQLLEFWEGDLILSTAK
SLPAGLHLYQTLNGDELTLDGIGLADGADIFVWNGKEVGGIDVLTGLDHEPVLLNVLHLA
GYNEGGKGQHFTESQHIFPCSAELSTLCKALTSSRGIILMNSSGSDNEAKNWKVIPEENM
KKTVKTTGLTDGSSILVLDSHDQSLVNVVDGNLTAFTHDISWLQVKNFCRLEAEERLVKI
TATIETVMSDIKITAIRELQLEEQLVNDICLRPINRNGKLLSPVPEDYTVKEAELKMGSL
LGLCHGKAPTSTQLFLYFVIGNDLQAVPEMEIVVEETATVKECLNLMLEKSGLPGDSWHL
RRIDWCYEAGEALSEENATLKELNVCNGDTLVITEGKLPPKGFLKVPIWWYEPLIYYGHQ
EPIQNQVNGVTCKIGALEVSSAGTSPTYIQTDMRLCYMGDIEISGEASLADLKIQAMTLP
SFQEFSVPSPEFLRAWTVESKRPGKLLRNNQQQLNEYKLGGKAEICIEPLQKEESLSPSD
LLLRVQMGIPGERDYYCSADLLWDISKECTALALRQRLAAHYSLPVDKIEIAKHFPEKFE
WMPISSWTQQISKRKRKKKQESLQSAPYHLKDGDIIGVKNLLLDDSKDFSTMRDDIGKEK
LRLLAVEKKKSRQAEHLQNDVFSEGKVAPKHRKPEVALSINVGVFR
NT seq 3741 nt   +upstreamnt  +downstreamnt
atgttcggggacctgttcgaggaggagccgtcccttgcgcctggcctcccttgtggcccc
gggaagaaggccaagccccgggacgcggagccgccggccccgagggaggtcacccattta
agcgggattaagaaccagggtgggacctgctacctcaactccctgctgcagactctgctt
ttcacgccagagtttagagaggcactgttttctctaggccctgaagaacttggttctctg
gaagataacaataaaccagatgcaaaggttcggataattccattacagttgcaacggttg
tttgctcagcttttgctcttagatcagcaggctgcatctacaacagacctcactgacagc
tttggatggaacagcaatgaggaagtgagacaacatgatgtgcaggagttaaatcggatt
ctgttcagtgctttggaaacttctcttgtgggtacttctggccatgaccttattaatcgc
ctgtaccatggaactgttgttaaccagattgtttgtaaagaatgcaagaacattagcgag
agacaggaagatttcttagacctaacagtggctgtaaaggatgtatctggcttggaggag
gccctgtgtaacatgtatgtggaagaggaatattttgaaaatgataatttatatcgatgt
ggagcatgcaataaactggttgaagcatcaaagtctgccaaactacgcaagttgcctcca
tttctcactatctccctcctgaggtttaactttgatttcgagaagtgtgaacgatacaag
gaaacgagctgctatacattccctttccggataaacctcaggcctttttgtgagcagacc
gagttggatgatttggagtacatgttcgacctcttttctgttattatacacaaaggtggc
tgctatggaggacattatcatgtttttatcaaggatgttgatgaattaggaaactggcaa
ttgcaagaggagggaaacaaactaactaaggataagattgtgaaagataatgaaagtggc
aaagaaaatgagaatccactgacagacctgaaagagatcttatcacaggaagaatctaaa
caaattcctgtggatcagttagggcagaaatttttagagaaaaaagggatatcctggaac
aagaaataccggaaaccttttggaccattacgaaagtatttgcagagtcattctcaggta
tttctattcagtcctgatggaaataagattagtttaaaagagaactaccacaagctccag
tttgggtcagattctcaaggacaagatttgcagagcccttcccagaacaacaatgtccag
tggacttcagaaaaactgtccacaaggttaaaggatgacacttctggttctcactggttt
gatttgaatgattcaaaagtccagccaattaaggagaaagatattgagaaacaatttcag
ggtaaagagagtgcctacatgctgttttatcgaaaatcccgattgaaaagaccatctgaa
gctcatgcaaatccaagatatggaattcctgaacacctcttgaatgaaatgaatgctgct
aacgctgaactgcagaagaggagggcagaatgtgactctgcagacaataacattgacttg
catcttcatttggcttctcgatataaattttacaatggggctctccacccatcgctttct
cggaaggaaagtgtgctggatctgactattgataaaagaaaaaccctaggagatctgcga
caatctgtatttcagctcttggaattttgggaaggagacctgattctcagtactgcaaag
tctctcccagcaggacttcatctttaccagacgcttaatggagatgagctgactctggat
ggcattgggttagctgatggggcagacatctttgtgtggaatggaaaggaggttggtggc
attgacgtgctgacaggccttgaccacgagcccgtacttctaaatgttcttcatttagcg
gggtataacgaaggaggaaaaggtcagcacttcactgaatcccagcatatttttccatgc
agtgcagagctgagcactctgtgcaaagccttaacatcatcaagagggatcatcttaatg
aacagttcaggatcagacaatgaagctaaaaactggaaggtaattcctgaagagaatatg
aagaagacagtcaaaacaactggtttgacagatggaagctcaatactagttttagacagc
catgaccaaagcttggtaaatgtggtagatggcaatttgactgcttttacacatgatatc
agctggctacaagttaaaaatttctgcaggttggaggctgaagagagactagttaaaatt
actgcaactatagaaacagtgatgtcagacatcaaaattacagcaatacgggagttgcaa
ttagaggagcaattagtgaatgatatctgtctcagacctattaacagaaatgggaagctt
ctgtctccagtgccagaggattacactgtcaaagaagcagagctgaagatgggaagcttg
ctgggactgtgccatggaaaagctccaacttccactcagctcttcttgtattttgttatt
ggaaatgatctacaggcagtcccagaaatggagatagttgttgaagagactgccactgtg
aaagagtgcctaaacttaatgctggagaaatctgggttaccaggtgacagctggcatttg
agaaggattgactggtgctatgaagctggagaggcattaagtgaggaaaacgccactttg
aaagagctcaatgtctgcaatggcgatacattggttatcactgaagggaaacttccacca
aaggggttcctgaaagtacccatctggtggtatgagcctttgatttactacggacatcaa
gagcctattcagaaccaagtgaatggtgtgacctgtaagataggggctttggaagtatct
tcagctggaacttctccaacatacatccaaacagacatgaggctttgttacatgggtgat
atagaaatctctggagaagcttctttggcagatctgaagattcaggccatgaccttgcca
tccttccaggagttcagtgtcccatcaccagagtttctcagagcctggacagtggaaagt
aagcgcccaggcaaacttttacgaaacaaccagcaacaactcaatgaatacaaactggga
ggcaaagcagaaatttgcatagaacctttacagaaagaagagagccttagccccagtgac
ttactgcttcgagtacagatgggcatacctggggagagggattattactgctctgcggat
ttgctatgggatatctccaaggaatgcacagcgttggcactgaggcagcgacttgctgca
cattattctcttcccgtggataaaattgaaattgctaaacacttccctgagaagtttgag
tggatgccaatatctagctggacccagcaaatttcaaagagaaaaagaaagaaaaaacag
gagagtctgcagtcggcaccctatcacctgaaagatggagatattattggtgtgaagaat
cttttacttgatgacagtaaggacttcagtaccatgagagatgatattggaaaagagaag
ctgaggctacttgctgtggaaaaaaagaaaagcaggcaagcagaacatttgcagaatgat
gttttttctgagggaaaggtggctcctaaacatcgtaagccagaagtggctctttcaatc
aatgtgggagtcttcagatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (3)   
   Pfam (3)   
All databases (40)   

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