KEGG   Alligator sinensis (Chinese alligator): 102379982
Entry
102379982         CDS       T02922                                 
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X2
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
asn  Alligator sinensis (Chinese alligator)
Pathway
asn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102379982 (PARN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asn03019]
    102379982 (PARN)
Enzymes [BR:asn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     102379982 (PARN)
Messenger RNA biogenesis [BR:asn03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102379982 (PARN)
SSDB
Motif
Pfam: CAF1 RNA_bind R3H NCBP3 CCDC47 RRM_1
Other DBs
NCBI-GeneID: 102379982
NCBI-ProteinID: XP_006015586
UniProt: A0A1U7RME0
Position
Unknown
AA seq 583 aa
MDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVTIPEDQKKFI
ERVVERIEDFLKNEENESLELEPCTGFQRKLIYQTVSWKYPKGIHVETLETEKKERYIII
SKVDEEERKRREQQKQEKEQGQLNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFY
CPLPDDLNEFKEVTSCVFPRLLDTKLMASTQPFKELINNTSLAELEKRLKEIPFNPPKVD
SAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFNK
LFLMRVTDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKRTKRKCTEDSWKEMERKRLKT
QCTPYISQSRYYCVNRPSGWTHFTATSTAGKRSMSPIQEEAGSDDMEEEEVQDTELDERD
SCAESVPGGRKRAKKFKKVKKEQGPTGSITSSSTELFEVPDSW
NT seq 1752 nt   +upstreamnt  +downstreamnt
atggatttcttgctgtttcagtttggcctttgcacttttaaatatgatcacacggaagag
aagtacataatgaagtcatttaatttctatatttttccaaaacccttcaacagaagttca
ccagatgtcaagtttgtctgtcagagttcaagtatagactttttagcaaaccaaggattt
gattttaataaagtttttcgcaatggaataccatatttaaatcaggaagaagaaagacag
ttacgggagcagtatgatgaaaaacgttctcaagccaatggtgctggttccctgtcatat
atttctcctaatgccacaaaatgtcctgtgacaattcctgaagatcagaaaaaattcatt
gagagagtggtggagcgaatagaagatttcttaaagaatgaagaaaatgaaagtttggaa
ctggagccatgcacaggatttcagaggaaattaatttatcagacagtgagctggaaatat
ccaaaaggtatccatgttgaaactctggagacggagaagaaggaaagatatattatcatt
agcaaggtagatgaagaagagcgcaaaagaagagaacagcagaaacaagaaaaagaacag
ggacaacttaatgatgcagtgggattttccagagtcatccatgccattgctaattctggc
aagcttgttattggacacaatatgctactggatgtcatgcacactatacaccagttctac
tgtcccctgcctgatgaccttaatgagttcaaggaagtaacatcctgtgtttttcccagg
ctattggatactaaactgatggcaagtacacaaccttttaaggagctaattaataacacg
tcccttgcagaactggaaaagcgtttaaaagagattccattcaaccctcctaaagttgac
agtgcagaaggatttccaagttacgacacagcttctgaacagcttcacgaagcaggctat
gatgcttacataacaggactgtgtttcatctccatggctaatttcctgggttcatttctc
agtcctccaaaaaatcacgtatctgctagatcaaaactcattgaacctttttttaacaag
ttatttcttatgagagtaacggacataccatacctgaatttggaaggaccagacttgcag
ccaaaacgagatcatgttcttcatgttacgtttcccaaagagtggaagaccagtgacctt
taccagctcttcagtgcctttggtaatattcaggtgtcctggattgatgatacatcagcc
tttgtgtcgctaagccagccagagcaagtacaaatagctgtaaacaccagcaggtacgct
gaaagttataggatccagacctatgcagaatatgttgagaaaaaacatgaagagaaacga
acaaaaagaaaatgtacagaagatagttggaaggagatggagagaaaacgattaaaaact
cagtgcacaccatacatttcccagagtcggtactactgtgttaacagaccatcaggatgg
acccattttacggcgactagcacagcaggaaagagaagtatgagtccaattcaggaggaa
gctggctctgatgatatggaagaagaggaagtccaagacacagagctggatgagagagac
tcctgtgcagagtctgttccaggtggaaggaagagagccaagaagttcaaaaaggtcaag
aaggagcagggtccaacaggaagcatcacaagcagttccactgaactctttgaagtccct
gattcgtggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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