KEGG   Candidatus Arsenophonus lipoptenae: AUT07_00415
Entry
AUT07_00415       CDS       T04248                                 
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
asy  Candidatus Arsenophonus lipoptenae
Pathway
asy03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:asy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AUT07_00415 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:asy03400]
    AUT07_00415 (recD)
Enzymes [BR:asy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     AUT07_00415 (recD)
DNA repair and recombination proteins [BR:asy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AUT07_00415 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 RecD_N Viral_helicase1 UvrD_C_2 Helicase_RecD AAA_11 AAA_22 SH3_13 UvrD-helicase SLFN-g3_helicase UvrD_C CbiA DEAD nSTAND3 AAA_16 PhoH AAA_24 AAA_5 AAA_28 ResIII MukB T2SSE TrwB_AAD_bind AAA_31 AAA_33 Mg_chelatase SRP54
Other DBs
NCBI-ProteinID: AMA64987
UniProt: A0A0X9W6T3
Position
519229..521076
AA seq 615 aa
MISLLKKAINLNLFHSLDVQLAIRLVKDENPLLLLIFSLLSAATRIGHVCLFIDKLQPDY
LFFGNHIEISLALWEKSGSPNVDKIYYELKKCNAVYDLHNASIKPLVLSGNKLYFQRMWF
DEGLVANFFSNNLIKIIDEERLKITLTRFFEPSNIINWQKIAVALAVTSRIAIISGGPGT
GKTTTVARLLATLVALSDKKLIIKLVAPTGKAATRLTKSLNSTLLKLNLSNTEKEIIPYK
AQTIHRLLGAQIDNESLRYNEENLLSLDVLIIDEASMISLSIMAKLIKALPDNSHIILLG
DSDQLASVEAGAVFHDLCSFSKYGYSYERVKQLSKITNYDLSNFISNNGPEIKDRICLLH
TSYRFDTKSQIGLFATAVKQCNMNYINKLLTKSANGAEVTFNHLGSSDQYAQLLFDIVKN
YSYYFNMIYINYDPEEILTAFNSYRLLVALREGPYGVMGLNYQLEYVLYHNGIIKYKDHS
WYKNYEGRPIMILENDSSLNLFNGDIGIILRDGQRDLKAFFQLSNGITKKISLSRLPKHE
TTFAMTVHKSQGSEFEHVALVLPPIFSSIISKELIYTAITRAKNQLTIYSDINVLIKGLC
TSTERFSGLTERLFY
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgataagtttattaaaaaaggctattaatcttaatttatttcattctctagatgtacaa
cttgctattcgattagtgaaagatgaaaatccattattattgctgatattttcattgtta
agtgcggcaactagaattggtcatgtttgtttatttatcgataaattacaacctgattat
ctattttttggtaaccatatcgaaatttctcttgcactttgggaaaaatcaggatcacca
aatgttgataaaatttattatgaactgaaaaaatgtaatgctgtttatgatctacacaat
gcatcaataaaacctttagtgttgtctggtaataaattatattttcaacgaatgtggttt
gatgaaggattagtagctaattttttttctaataatttaataaaaattattgatgaagaa
cgattaaagattactttaactcgtttttttgaaccttctaatataataaattggcaaaaa
atagccgttgcattagcagtaacaagtcgtattgctattatttctggtggtcctggtaca
ggaaaaacaactacagtagcacgtctattagccactctagttgcattaagtgataaaaaa
ttaatcattaaattagtagcacctacaggaaaagcagctacaagattaacaaaatcttta
aattctacattattaaaattaaatttatcaaacactgaaaaagaaattatcccttataaa
gcccaaactattcatagattattaggtgcacagatagataatgagtcattacgttataat
gaagaaaacttattatcattagatgtattaattattgatgaagcatcgatgattagttta
tcgattatggctaaattaatcaaggctttacctgataatagtcatattattttattaggt
gatagtgatcaattagcttcagttgaagccggtgctgtttttcatgatttatgcagtttt
tcaaaatatggttatagctatgaacgagttaaacaactttcaaaaataacaaattatgat
ttatctaattttatttctaataatggaccagaaattaaagataggatttgtttattacat
acaagttatagatttgatactaaatctcaaattgggttatttgccactgcagttaaacaa
tgtaacatgaactatataaataaattactaacaaaatcagctaatggtgcagaagttact
tttaaccatctaggatcatcagatcagtatgcgcaattattatttgatattgttaaaaat
tatagttactattttaatatgatatacataaattatgatcctgaagagatcctaactgct
tttaatagttatcgtttactagttgctctaagagaaggtccatatggcgttatgggatta
aattatcaattagagtatgttttatatcataatggaataattaaatataaagatcatagt
tggtataaaaattacgaaggacgtccaattatgattttagaaaatgatagtagtttgaat
ttatttaatggtgatattggcattatattacgggatggacaaagagatttaaaagctttt
tttcagttatcaaatggaataacaaaaaaaatatctttaagtagactacctaagcatgaa
acaacttttgcgatgacagttcataaatcgcaaggatctgaatttgaacatgttgcattg
gttttgccacctatttttagctctattattagtaaagaacttatttatacagcaattacc
agagcgaaaaatcaattaactatttattctgatattaatgttttaattaaaggattatgt
acatctactgaacggtttagtggtctaaccgaacgtttattttattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (57)   

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