KEGG   Candidatus Arsenophonus lipoptenae: AUT07_00608
Entry
AUT07_00608       CDS       T04248                                 
Symbol
rnr
Name
(GenBank) Ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
asy  Candidatus Arsenophonus lipoptenae
Pathway
asy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:asy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AUT07_00608 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:asy03019]
    AUT07_00608 (rnr)
   03016 Transfer RNA biogenesis [BR:asy03016]
    AUT07_00608 (rnr)
Enzymes [BR:asy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AUT07_00608 (rnr)
Messenger RNA biogenesis [BR:asy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AUT07_00608 (rnr)
Transfer RNA biogenesis [BR:asy03016]
 Prokaryotic type
  tRNA degradation factors
   AUT07_00608 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 Rho_RNA_bind
Other DBs
NCBI-ProteinID: AMA65161
UniProt: A0A109QEC7
Position
752300..754504
AA seq 734 aa
MIKKILYKYLVDEKYYLPICESILKLLTKFTIPISQKKIAKILKLTKEEELKTLYHLLQM
MEYNKQLVSTSSKYYALPENINLLKGVVIGHHNGFGFLRVYGKKKDMYISSKEMKKVLHG
DFVLTQQLYKDGRESKEEVHIIRVLIPRNNHIIGRYLNESGIGYVIPEDRRLSFNIFVSP
ENINGANIGNIVVVEMTTRPLKNIKASGNIIEILDEKVSINMAIEVALRTHAIPYIWPQA
VKKQVSRLSNKISISEKKNRVNLCHLPLVTIDDDDASDFDDAVYCSLQENRSWCLWVAIA
DVSYYVHPQTALDIEAIKRGNSVYFPSRVIPMLPEILSNGLCSLKPSVEKLCLVCEMQLS
EQGQMISYKFYEAVMCSHARLTYNKVWRILRGDKKLRLYYINLIPHLEQLYHLYKTIYSS
RLKRGAISFKTTEVKFIFDKKKQIKRIEKIKRNDIHKLIEECMILANMAAANFVEKNKEP
SLYRIHESPSKDSIINLRTILSEFGLQLSGGMNPRTADYANIMDKVNKHLDYELLQMIIL
RSMKPAFYYPKNIGHFGLALKSYAHFTSPIRRYSDLLLHRSIKYILSTDQKNSDNILTPT
GGYHSYANNLFSLGEICSMAERRADEAIRDVYDWLKCDFMKNQVGNVFNGIITRITDFGF
FVRLKNILIDGLVHISSLNNEYYFYDNIRNRLIGELSGIEYHLGDKVKIRVEAIHMNIRK
IDFKLLSILRKVKK
NT seq 2205 nt   +upstreamnt  +downstreamnt
atgataaaaaaaattttatataagtacctagtagatgaaaaatattatttaccaatttgt
gaatccattttgaaattattaacaaaatttaccatacctattagccaaaaaaagatagct
aaaatactaaaattaactaaagaagaggaattaaaaactttgtatcatcttttacaaatg
atggaatataataagcaattggtatccacttccagtaaatattatgcgttaccggagaat
attaatttattaaaaggtgttgttattggtcatcataatggttttggttttttgcgagta
tatggcaagaaaaaggatatgtatatctcttcaaaagaaatgaaaaaagtattacatggt
gattttgttcttacacaacaattatataaagatggccgagaaagtaaagaagaagtacat
attattcgagtccttatccccagaaataatcatattattggacgttatttaaatgaatct
ggaattggatatgtaatccctgaagatcgtagattatcatttaatatttttgtttctcca
gagaacattaatggtgctaatataggcaatatagttgttgtagagatgactactaggcca
ttaaaaaatatcaaagcatcaggaaatattatagaaatattagatgaaaaagttagtatt
aatatggctatagaggttgcattaagaactcatgcaattccttatatttggccacaagca
gtaaaaaaacaagtttctagactttctaataaaatttctatatcagaaaaaaaaaatcgg
gttaatttatgtcatctacctttagtcactattgatgatgacgatgctagtgattttgat
gatgcagtatattgcagtttacaggaaaatagaagttggtgtttatgggttgcgattgct
gatgtcagttattatgtccatccacaaactgctttagatattgaagctatcaaacgtgga
aattcagtgtatttcccgtcacgcgtaataccaatgttacctgaaattttatctaatgga
ttgtgttcattaaaaccttcagtggaaaagctttgcttggtatgtgaaatgcaattatca
gaacaaggacaaatgatttcatataaattttatgaagcagtaatgtgttctcatgctaga
ttaacgtataacaaagtttggagaattttacggggtgacaaaaaattacgtctgtattat
attaatttaataccacatttagaacagctttatcatttatataaaacaatatatagttca
cgtttgaaaagaggagctatttcatttaaaaccacagaagttaaatttatttttgataaa
aaaaaacaaattaagcggatagaaaaaattaaacgtaatgatatacataaattaatagaa
gaatgtatgattttagcaaatatggcggctgctaattttgttgagaaaaataaagaacct
agtttatatcgtatccatgagagtccttcaaaagatagtattataaatttacgtacaata
ttaagtgaatttggtttacaattatcaggaggtatgaatcctaggactgctgattatgct
aatattatggataaagttaataagcatttagattatgaattattacaaatgataattttg
cgctcaatgaaaccggctttttattatccgaaaaatattggacactttggattagcattg
aaatcttatgctcattttacttcacctattcgtcgttattcagatttattattacatcgt
tctattaaatatattttatctactgatcagaaaaacagcgataatatattaacaccaact
ggtggttatcattcatatgctaataatttattctcattaggtgagatttgttcaatggca
gaacggcgagctgatgaagcgattagagatgtttatgattggttaaaatgtgattttatg
aaaaatcaagttggtaatgtatttaatggtattattactagaataacagattttggtttt
tttgtacgcttaaaaaatattttaattgatggtttagtacatatttcttcacttaataat
gaatattacttttatgataatattagaaatcgacttattggtgaattatcaggaatagaa
tatcatcttggtgataaagtgaaaattagagttgaagctatacatatgaatattcgaaag
attgattttaagcttttatcgattttgcgtaaagtaaaaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (36)   

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