KEGG T00041: AT1G08130

Arabidopsis thaliana (thale cress): AT1G08130

Entry

AT1G08130 CDS T00041

Gene name

LIG1

Definition

DNA ligase 1

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

ath Arabidopsis thaliana (thale cress)

Pathway

ath03030	DNA replication
ath03410	Base excision repair
ath03420	Nucleotide excision repair
ath03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:ath03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:ath03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ath03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ath03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2

Other DBs

NCBI-GI:

NCBI-GeneID:

MIPS:

TAIR:

UniProt:

Position

AA seq 790 aa
MLAIRSSNYLRCIPSLCTKTQISQFSSVLISFSRQISHLRLSSCHRAMSSSRPSAFDALM
SNARAAAKKKTPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLPKTEDLLEPVSDSANP
RSDTSSIAEDSKTGAKKAKTLSKTDEMKSKIGLLKKKPNDFDPEKMSCWEKGERVPFLFV
ALAFDLISNESGRIVITDILCNMLRTVIATTPEDLVATVYLSANEIAPAHEGVELGIGES
TIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGSRSTQTMMFKPEPLTVVKVFDTFRQIA
KESGKDSNEKKKNRMKALLVATTDCEPLYLTRLLQAKLRLGFSGQTVLAALGQAAVYNEE
HSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPML
AKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMEDGTFEIYSRNAERNTGKYPDVALA
LSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLY
LNGQQLIQENLKIRREKLYESFEEDPGYFQFATAVTSNDIDEIQKFLDASVDVGCEGLII
KTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLACYD
VDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEV
KAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQIADLYQAQKHNH
PSNEVKGDDD

NT seq 2373 nt +upstreamnt +downstreamnt
atgttagcgattcgatcgtcgaattacctccgatgcataccttctctctgtactaaaacc
caaatctctcaattctcctccgtgttaatctcttttagccgccaaatttcccacttgcgt
cttagctcgtgccatagagccatgtcttcttcccgcccttctgcatttgatgctctcatg
tccaatgctcgtgcagccgccaagaagaagactccccagacaactaatttgtctcgctcg
ccgaacaaaaggaaaattggagaaacccaagatgctaatttgggcaaaactattgtttcc
gaaggtacacttccaaaaacggaggatctgctggagcctgtttctgattctgcaaatccc
agatcggatacatcgtcaattgcggaggattcaaagacgggagcgaaaaaggctaagact
ttgagcaagacagacgaaatgaagagcaaaattggattgctgaagaagaagccgaatgat
ttcgatcctgaaaaaatgtcttgctgggagaaaggggagagagttccgtttctgtttgtc
gcattggcttttgatctgatctcaaatgaaagtggccggattgtgattactgatattctg
tgtaacatgttgagaactgttattgccactactcctgaggatttggtcgctactgtttat
ctttcggcgaatgagattgccccggctcatgaaggtgtagaattgggaattggtgagagt
acaattatcaaggctatctctgaggcttttggtagaactgaggatcatgttaagaagcag
aatacggaactgggagacttgggacttgtagcaaaaggaagccgttcgactcagactatg
atgttcaagcccgaaccattgactgttgtcaaggttttcgatacgtttcgacaaattgct
aaggaaagtggaaaagatagtaatgaaaagaagaagaatcgaatgaaggcacttcttgtg
gcgacaacagactgtgaacctctttacttaacacgattacttcaggcaaaattgcggtta
gggttctcaggtcagactgtcttagccgcattgggacaagccgctgtatataatgaagag
cactcaaagccacccccaaataccaagtctcctttagaagaggctgcaaagattgttaaa
caagtattcactgtacttcctgtctatgacattattgttcctgctcttctaagtggcggt
gtgtggaatcttccaaaaacttgtaactttacattgggtgttccaattggacccatgctt
gcaaaaccaaccaaaggtgtagctgagatactgaataaattccaggacatcgttttcaca
tgtgaatacaaatatgatggggaacgtgcacagatacattttatggaggatggtacattt
gagatatacagtcgaaatgctgaaagaaacactgggaagtacccggatgttgctcttgcg
ttatcaagattaaagaagccttctgtgaaatcttttattctggattgtgaagttgttgct
ttcgacagggagaaaaagaaaattcttccgttccagattttgagcactcgagcccgtaaa
aatgtgaatgtcaatgatatcaaggttggcgtatgcatctttgcttttgacatgttatat
ctaaatggccaacaacttatccaggagaatcttaaaattcgccgagagaagctatacgaa
tcatttgaggaagatcctgggtatttccagtttgcaactgctgtaacatctaacgatatc
gatgaaatacaaaagtttcttgacgcttctgttgatgttggctgcgaaggtttaatcatt
aaaacattggactcagatgctacctatgagcctgcaaagcgatcaaataattggctaaaa
ctgaagaaagactatatggacagcattggggactctgtggatcttgtaccaattgctgct
ttccatggacgtggaaaacgcacaggtgtctatggtgcatttttactcgcttgctatgat
gttgataaggaagagttccagagcatttgtaaaattggtactggattttctgatgccatg
cttgacgagcggtcgtccagtcttcgctctcaagtgattgctactccaaaacaatactac
cgagttggagacagcctcaatccagatgtttggtttgagcccactgaggtctgggaagtg
aaagcagctgacttaacaattagccctgtgcaccgtgcagctactggcatagtggatcct
gataaggggatttctcttcgttttcctcgtctacttcgtgtacgggaagacaagaagccc
gaggaagcaacatcatctgagcagattgctgatttgtaccaagctcagaaacacaatcat
ccaagtaatgaagtcaaaggtgacgatgattga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (3)   
   UniGene (1)   
   MIPS-ATH (1)   
   OC (1)   
   TAIR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

Download RDF

DBGET integrated database retrieval system